GgaALTD0004373-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000010956 | TTC21B
Description
tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:HGNC:25660]
Coordinates
chr7:19157864-19159669:+
Coord C1 exon
chr7:19157864-19157981
Coord A exon
chr7:19157982-19157986
Coord C2 exon
chr7:19159512-19159669
Length
5 bp
Sequences
Splice sites
5' ss Seq
AAAGTATGT
5' ss Score
6.93
3' ss Seq
ATTTTTCTTCCTTCCATTAGGCA
3' ss Score
9.19
Exon sequences
Seq C1 exon
GGATTGATTCTGAAAGCATGGCTTGATCTCACTTGTGGGAAAGAAACTCATATTAAAAAAGCTTTGAAGTACTTTGATGAAGCGCTTCAGGAAGGGAATGATGTTTTTGCTCTCCTTG
Seq A exon
GTAAA
Seq C2 exon
GCACAGTATTTTGAGATCCGACAGAATTATTCAGGAGCTCTGGAAATGGTGAACCAGATAATTGCAAACTTTCCAAACTTCATTCCTGCTTTCATAAAGAAAATGAAGCTGCAACTAGCCTTGCAGGACTGGGAGCAGGCAGTTGAAACTGCACATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010956-5-8,6-8-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGTACTTTGATGAAGCGCT
R:
TCACCATTTCCAGAGCTCCTGA
Band lengths:
106-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]