BtaALTD0023000-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000016512 | TTC21B
Description
Bos taurus tetratricopeptide repeat domain 21B (TTC21B), mRNA. [Source:RefSeq mRNA;Acc:NM_001102108]
Coordinates
chr2:30445209-30450262:+
Coord C1 exon
chr2:30445209-30445320
Coord A exon
chr2:30445321-30445325
Coord C2 exon
chr2:30450105-30450262
Length
5 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TTACTTTTTTCTCCCATTAGGCA
3' ss Score
9.81
Exon sequences
Seq C1 exon
GTTTTGAGAGCATGGCTTGATATTACAAGAAGAAAAGAACCTTATACTAAAAAAGCATTAAGATACTTTGAAGAGGGATTGCAAGATGGGAATGATATTTTTGCTCTACTGG
Seq A exon
GTAAG
Seq C2 exon
GCACAATGCCTTGAGATGCGCCAGAATTATTCAGGTGCTCTGGAGACTGTGAACGAGATAATCATGAATTTTCCAAGTTTCCTTCCTGCTTTTGTAAAGAAAATGAAACTACAGCTAGCTTTGCAGGACTGGGACCAGACGGTTGAGACAGCACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016512-5-6,6-6-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAGGGATTGCAAGATGGG
R:
CGTTCACAGTCTCCAGAGCAC
Band lengths:
99-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development