MmuALTD1021980-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000034848 | Ttc21b
Description
tetratricopeptide repeat domain 21B [Source:MGI Symbol;Acc:MGI:1920918]
Coordinates
chr2:66242631-66247430:-
Coord C1 exon
chr2:66247313-66247430
Coord A exon
chr2:66247308-66247312
Coord C2 exon
chr2:66242631-66242788
Length
5 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CATTTTTCTCCTCCTATTAGGTT
3' ss Score
10.49
Exon sequences
Seq C1 exon
GGGCCGATTTTGAAAGCGTGGCTTGATATTACAAGAGGGAAGGAACCTTATGCTAAAAAAGCCCTGCGGTATTTTGAGGAGGGATTACAAGATGGAAATGATATTTTCGCTCTTCTGG
Seq A exon
GTAAG
Seq C2 exon
GTTCTGTGCCTTGAGATTCGACAGAATTATTCCGGAGCTCTGGAGACCGTGAGCCAGATAATTGTAAACTTTCCAAGCTTCCTTCCTGCCTTTGAGAAGAAAATGAAATTACAACTGGCTTTACAGGATTGGGATCAGACAGTGGAGACAGCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034848-8-9,9-9-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.008
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCCTGCGGTATTTTGAGG
R:
GGTCTCCAGAGCTCCGGAATA
Band lengths:
108-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types