HsaALTD1016407-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000123607 | TTC21B
Description
tetratricopeptide repeat domain 21B [Source:HGNC Symbol;Acc:HGNC:25660]
Coordinates
chr2:165941027-165943341:-
Coord C1 exon
chr2:165943224-165943341
Coord A exon
chr2:165943219-165943223
Coord C2 exon
chr2:165941027-165941184
Length
5 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CTTTTTTTCCCTTCCATTAGGCA
3' ss Score
9.91
Exon sequences
Seq C1 exon
GGACACGTTTTGAAAGCATGGCTTGATATTACAAGAGGAAAAGAGCCTTACACTAAAAAAGCACTGAAGTATTTTGAAGAGGGACTCCAAGATGGGAATGATACTTTTGCTCTGCTGG
Seq A exon
GTAAG
Seq C2 exon
GCACAATGCCTTGAGATGCGCCAGAATTATTCAGGTGCCCTGGAGACTGTGAACCAGATAATCGTGAATTTTCCGAGCTTCCTTCCTGCTTTTGTTAAGAAAATGAAATTACAACTAGCCTTGCAGGATTGGGACCAGACAGTTGAGACAGCACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123607-10-6,11-6-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.003
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(43.9=70.7)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGACTCCAAGATGGGAATGA
R:
GTTCACAGTCTCCAGGGCAC
Band lengths:
93-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains