GgaALTD0004373-2/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000010956 | TTC21B
Description
NA
Coordinates
chr7:21134623-21136433:+
Coord C1 exon
chr7:21134623-21134740
Coord A exon
chr7:21134741-21134745
Coord C2 exon
chr7:21136271-21136433
Length
5 bp
Sequences
Splice sites
5' ss Seq
AAAGTATGT
5' ss Score
6.93
3' ss Seq
ATTTTTCTTCCTTCCATTAGGCA
3' ss Score
9.19
Exon sequences
Seq C1 exon
GGATTGATTCTGAAAGCATGGCTTGATCTCACTTGTGGGAAAGAAACTCATATTAAAAAAGCTTTGAAGTACTTTGATGAAGCGCTTCAGGAAGGGAATGATGTTTTTGCTCTCCTTG
Seq A exon
GTAAA
Seq C2 exon
GCACAGTATTTTGAGATCCGACAGAATTATTCAGGAGCTCTGGAAATGGTGAACCAGATAATTGCAAACTTTCCAAACTTCATTCCTGCTTTCATAAAGAAAATGAAGCTGCAACTAGCCTTGCAGGACTGGGAGCAGGCAGTTGAAACTGCACATAGGTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010956-4-6,5-6-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(42.3=73.2)
A:
NA
C2:
PF145591=TPR_19=PU(75.8=90.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGTACTTTGATGAAGCGCT
R:
TCACCATTTCCAGAGCTCCTGA
Band lengths:
106-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]