HsaINT0175310 @ hg19
Intron Retention
Gene
ENSG00000101162 | TUBB1
Description
tubulin, beta 1 class VI [Source:HGNC Symbol;Acc:16257]
Coordinates
chr20:57594309-57598008:+
Coord C1 exon
chr20:57594309-57594634
Coord A exon
chr20:57594635-57597899
Coord C2 exon
chr20:57597900-57598008
Length
3265 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
GACCTTCCTCCTGCTTTCAGTTC
3' ss Score
10.32
Exon sequences
Seq C1 exon
GGGGCAGTATTCTGTGTTGAGGGAGGAAAAACACTCCCTTCCAAAAGCATGACAGGCAGAAAGCAGAGAAGGGCCAGGACTGGCTGAGGGCGGGGAGCTGGGCCTCTGGGGTGGACACACCCTTGGTCACATTGTGAGGGTAGCTTGGTTGGCCAGTCCCACCACTGCAGTGACCACAGTTGTGTTGGGCTCACACCAGTGAACCGAAGCTCTGGATTCTGAGAGTCTGAGGATTCCGTGAAGATCTCAGACTTGGGCTCAGAGCAAGGATGCGTGAAATTGTCCATATTCAGATTGGCCAGTGTGGCAACCAGATCGGAGCCAAG
Seq A exon
GTAAGTAATGTCTGGTTACTAATCCTAGCTTTACCACAGTCCATAGAGGCGGACAACCAAAAAAATACCCTAAGTTAGCAGGGAAGACAATAAGTCTAGCAGATTTAATGTACTTGCTAAATATCAGACAATGCCTTTGGGCTTTAATTCTTAAAAAAAAATTTCACATGGGAAAAGAAGGAAACAATCTTTAACTAAAGAGCTACAACACACATTAAGTGCTTAGAGTGTTAATTTAATTAATGTTAATTTTATCCATAGATACATATGTACAATACATGCCGACCATTATATTACATAATACGTTTATCATCTTTTTCTTTGCCCACTCTGTTGCCCAGGCTGGAGTAGAGTGGCAGAATCATGGCTCACTATAGCCTCAACCTCCTGGGCTCAAGCTATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGCACCACTATGCCTGGCTAATTTTTAAATTTTTTTTTGAGAGACAGGGATCTCACTTTGTTGCTCAGGCTGGTCTTGAACTCATGGGCTCAAGTGATCCTTCTGCCTCAGGCTTCCAAAGTGGTGAGATGACAGGTGTAGGCCACCGTGCCTGGCACTTTTATCATCTTTTATTTTTTTGAGATGGAGTGTCACTCTTGTTGCCCACGCTGGAGTGCAATGGCGCAATCTTGGCTCACTGCAACCTCCACCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCCAGTAGCTGGGATTACAGGCATGCGCCACCACGTCTGGCTAATTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGTCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATGTGCCCGCCTGGGCCTCCCGAAGTGCTGGGATTATAGGCGTGAGCCACTGTACCTGGCCCACTTTTATCTTAACAATGAACTTTTCATATCTAAAAACAGTAATTTGTCTCAAAACAGCTTTTTGAAGTTTTTTGAGAAACTTTCTGTACCCTGTCACTATGGTGTCTTTCCCCTCCCCTCTCATGTTTATTGTAACGCTTAAAAAAAATCAATTACTGTTTTATTAGTATGCAATTGAAAATTTAAGAAATTTAATTGAAAATAAAAGTTTTTTGTGTACAGTAACATAATTAATTAAAATACACTGTCTGGAATATAAATGAGTTTTTCTTTCCCTTGCCCCCCTGCTTAAAAATTTCCCCCAAGTACGTAACTTAATTGGCCAACCCCAAGAACACAGATGCCCGAACCCACAATCTCCAATCTTGATTTTAAGATGACCAATTGCACCGTGCAAAATTTATCGTGTTCTCTTTGCTGCTGTGAAATTACTTTTACTAATATGAGATGCATTAAAAGTGAGGTTTTGAAACACCTACATTCATCATCCATCAATGACACTTGGGTTGTTTCTGCCTTTTGGCTACTGTGAGTAATGCTGCCAGGAAACAACTAAGGCTTTTAAATGCAGGCGTTTTAAACCGGGGGCAAGGAACATTACTGCTTGAAAAGAAGTCACCATTCCTCCATGCCTCAGGGGTAAGACATTCATAACTCACACACAGAGAAGTGGGAGGCAGGAGCCCTGCTGCTCTGAAGCTGGAAGATAATACGGAAAGGGGCCCTCAAGAGAAAGTGTTAGGTTTAGATAGGGTTTTAGCTCTCACTCTGGAATCGTATGGTCTAGCGTTGAGAGTCCTGGCTGACTCATCATTTAGAGATATAAGAACTTTAAGACACATTTAATTTGGGGTATCTTAGAACTTGAATTTATTTATTCTTCCACTCCCTGAACAGTGCTGGCAGTTTACCATGAACTGCCTTGTTATTAAGACCATGGCCAGAGCAGCACTGTCATTTAGAAGATATGGCTGGGGTTTTTAACATACCCTTGGGGATTTTAATATATGTGAATACATTTTCATTGCATTTTAATATGTGCCTTTCAGGGTGATCAAAAGGAGTCTTCCCAGTAACTGTTTCCATATTAAGAGCTTGGCACATATCTATATTAATAAGTACTGTGTATGTGACTGGAAGTGCAGTATGTTTCAAATAGTTACCAGAGGACAACTATGTGTAATTGTGAGTTGTATGTATACCTGACAATCAAAAATGCACATTACTGGCCGGGCACAGTGGCTCACGCCTGTGATCCTAGCACTTTGGGAGGCCGAGGCAGGTGCATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGGCTAACATGGCAAAACCCTGTCTCTACTAAAAATGCAAAAATTAGCTGGGCATGGTGGTGGACGCCTGTAATCCCAGCTACTTGAGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGGTGGAAGTTGCAGTGAGCCAAGATTGTGCTACGGCACTCCAGCCTAGGTGACAAGAGTGAAACTCTGTCTCAAAATAAATAAATAAACAAACAAACAAACAAACATAAAAAAATAAAAAAAAGAAAGAAAGGCCGGGTGCTGTGGCTCATGCCTGTAATTCCAGTACTTTGGAAGGCCAAGGAGGGTGGATCACAAGGTCAAGAGATAGAGACCATCCTGGCCAACATGGTGAAACCCCGTGTCTACTAAAAATATAAAAATTAGTTGGGCGTGGTGGTGCGTGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGCGGAGGTTGCAGTGAGCCGAGATCACGCCACTGCACAGATAAGACTCCATCAAAAAAAAAAAAAAAAAAGGCGCTAATTACTTAAAATCATGCACAGAGGTCCAAGTTATGGGCTGTTTGGAAAAGTTCATGAAAAGAAATCCCCAAAGTGAAATGAGTTATTACTGTGAAATCAGATAAGAATTCAGTTTATTTTCCTTTAATGGAATCTACACTTTACTAGCTTGGAGCATTATAAGGAGAAATTAGAGCTATATTGACATTAAATTCTAAAACAACAGCTTTAATGTATATAATGGCATGAATTTAATAGGAGGAAAATCCAATTTAGTACTTTGTGTTTGACATTTTATTTAAGGAGTTCAGGTGGGGAGAAAATGCAATCTTCATATTACTTCACATTGCTTAGTAGAGGCAAAAAGCGAATGATGCCATGGTTATTTATGAAAAGGCCCTAAAAGAATGTCTTGGGGAGGGTCAGGCAACCAGAGGGAAACAGGCTTGGGAATGCTAACTTTCTCTGTGGTTAACACAGCCTTTTTCGGGGTCCGTTTACTCTGACCTTCCTCCTGCTTTCAG
Seq C2 exon
TTCTGGGAGATGATTGGTGAGGAACACGGGATCGACTTGGCTGGGAGCGACCGCGGGGCCTCGGCCTTGCAGCTGGAGAGAATCAGCGTGTACTACAACGAAGCCTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101162-TUBB1:NM_030773:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009120=Tubulin=PU(7.2=84.2)
A:
NA
C2:
PF0009120=Tubulin=FE(16.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)