HsaINT0175313 @ hg19
Intron Retention
Gene
ENSG00000137267 | TUBB2A
Description
tubulin, beta 2A class IIa [Source:HGNC Symbol;Acc:12412]
Coordinates
chr6:3156278-3157783:-
Coord C1 exon
chr6:3157641-3157783
Coord A exon
chr6:3156387-3157640
Coord C2 exon
chr6:3156278-3156386
Length
1254 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
TGGTTCTTTTTTCATTTCAGTTT
3' ss Score
9.29
Exon sequences
Seq C1 exon
GCGGCAGGTCTCTGCGCAGCCCAGCCCGCCGGTCCACGCCGCGCACCGCTCCGAGGGCCAGCGCCACCCGCTCCGCAGCCGGCACCATGCGCGAGATCGTGCACATCCAGGCGGGCCAGTGCGGCAACCAGATCGGCGCCAAG
Seq A exon
GTGGGCTCACCGCCACGGAGGGGCCCGGGGTTGGGACCGAGGGTGCGGGCTGGGGCCGGGGCGGGGGCTGGAGGCCGCGGCGGCCCCGGGCTGGCCGGGTGGCACATTCCGCGGCGAGGCCGCCGGGCGGGGTCCGGGAGGCTGCATGACCCGCCAGGATGCCCGCAGCGCCGCAGCTGTGTGTGCGTTTAATCGGGGGCCTTTCGATTTCCCTGGGACACAGCCCTTCTGCGGGACGCGGTTGGCATTCCCCTGGGTGTATTTGTCTCAGAAACTTGGGTCGGGGGTACGGTCATATTTATTGCGCTAGCTTCATGTGAATTTAATTTGTATATTTTTCTCTACGGTTTGAATGAAAACATGCAGTGTCACTGGACTGGCAGATGTAACAGAGGCGTCCCTTTGGGTCGTACAGGCAAGGGTGTTAGATAAATTCCCTTGCTCGGGCACTGTCTTGACATGATGACATACAACGCGATAGTCTTGCTGCCAGTCCCCGAGGCGGCAGGTGACTGCGCTGGGTGGGGGCTGCAATTACCGACCGCTGTGTGGGAGGCAGCAGCGGGTCTGGTGCATGGGTGGGGGCGGGCGCCAGTACAAGGACGTGGTCTCTTTGAGAACCGCCATGTTGCCCACCCAGCCTCCCCGCCGCAAATTCACAATGCAGCCAGCGCCCTCACGATGGCCAGCTCCTTCCACTGCCGCCCAGGTGCCCTCCCAGGCTCCTGCTGCCCTTCGCCCAGTCCCTCCGGTGGTCAGTGCCAGCATGTAGATCGGTGGCTTAAACCTGCACTGTTGCAGGAGTGCCTGGGATCTGTGCCAAGAGAGCTTGATCCCTGGAGGCAGCCACAGAGTGGGTCCCCCTGTCCTTGGCCTGCCACGACCCATCAATCATCCCGGATGCAATGGCATTCAGCCCTGCCTGGGGTGACACAGCCTCCCTGTACCCCTTCTCCACTTCTCTACTCTCCCCACCCTCTCCCTAGAAGGGCATCTGCTGTGTCCCCTCCTCCTCCAGGGCCCCTCCCAGCCTTTCAGTCTATCCCCATAATATGGCCGATGCTCTGCGGATTTTCAAGCCCCTCAGCAGCGGCTGCTGCAGGAAATAGGGGGTGCAGCTCTTTGCTCTCTGTCTAGCACTTACTAACTGTCTGACCACAAAAGCCCCTGTTCCAAGGACATGGGAGGAGGACAAGGCCATCCTTAGTGACATTCAGGATGCAGAGCCATGGTGTGGTTCTTTTTTCATTTCAG
Seq C2 exon
TTTTGGGAGGTCATCAGCGATGAGCATGGGATCGACCCCACAGGCAGTTACCATGGAGACAGTGACTTGCAGCTGGAGAGAATCAACGTGTACTACAATGAGGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137267-TUBB2A:NM_001069:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.108
Domain overlap (PFAM):
C1:
PF0009120=Tubulin=PU(7.2=84.2)
A:
NA
C2:
PF0009120=Tubulin=FE(16.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)