HsaINT0176112 @ hg38
Intron Retention
Gene
ENSG00000182179 | UBA7
Description
ubiquitin like modifier activating enzyme 7 [Source:HGNC Symbol;Acc:HGNC:12471]
Coordinates
chr3:49813249-49813647:-
Coord C1 exon
chr3:49813479-49813647
Coord A exon
chr3:49813384-49813478
Coord C2 exon
chr3:49813249-49813383
Length
95 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TGCACTGGCTCTCTCCCTAGTTT
3' ss Score
9.57
Exon sequences
Seq C1 exon
GTATGTGCTGGGCTCACCTGCCATGCAGAGGATTCAGGGAGCCAGGGTCCTGGTGTCAGGCCTGCAGGGCCTGGGGGCCGAGGTGGCCAAGAACTTGGTTCTGATGGGTGTGGGCAGCCTCACTCTGCATGATCCCCACCCCACCTGCTGGTCCGACCTGGCTGCCCAG
Seq A exon
GTAAGTGTCCTGGGGGGCTATGGGCTGCCAGACCAAGGTGGGGGCACGGCCCAAGAGGAGTGTCTTTGCTCAGGCTGCACTGGCTCTCTCCCTAG
Seq C2 exon
TTTCTCCTCTCAGAGCAGGACTTGGAAAGGAGCAGAGCCGAGGCCTCTCAAGAGCTCTTGGCTCAGCTCAACAGAGCTGTCCAGGTCGTCGTGCACACGGGTGACATCACTGAGGACCTGCTGTTGGACTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182179:ENST00000333486:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0089916=ThiF=PU(33.3=77.2)
A:
NA
C2:
PF0089916=ThiF=FE(33.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCAGAGGATTCAGGGAGC
R:
GCTCCTTTCCAAGTCCTGCTC
Band lengths:
181-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains