RnoINT0159033 @ rn6
Intron Retention
Gene
ENSRNOG00000029195 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:RGD Symbol;Acc:1308323]
Coordinates
chr8:116754460-116754851:+
Coord C1 exon
chr8:116754460-116754628
Coord A exon
chr8:116754629-116754716
Coord C2 exon
chr8:116754717-116754851
Length
88 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CTGCACTGAACTTTTCTTAGTTT
3' ss Score
4.2
Exon sequences
Seq C1 exon
GTATGTACTGGGCTTGCCTGCTATGCAGAGGATCCGGGAAGCCAAAGTCTTGCTGTGTGGCCTGCAGGGCCTGGGAGCTGAGGTGGCCAAGAACCTGGTCCTTATGGGTGTGGGCAGCCTCACCCTGCATGATCCCCATCCCACCTGCTGGGCTGACTTGGCTGCTCAG
Seq A exon
GTAAGAGTTCTTGGGGGTCTCTATAATGCCTCCAAGAGCAGAGCCAAAGGGGAGTCTCTTTGATTAAGCTGCACTGAACTTTTCTTAG
Seq C2 exon
TTTTTCCTCTCAGAAGAGAGCTTGGGAAGGAGCAGGGCTGAGGCCTCTCAACCACAATTGGCCCAGCTTAATGAAGCTGTCCAGATCTCCGTCCACAGAGGCGACATCACTGAGGACCTAGTGCGGGGTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029195:ENSRNOT00000068295:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.044
Domain overlap (PFAM):
C1:
PF0089916=ThiF=PU(33.3=77.2)
A:
NA
C2:
PF0089916=ThiF=FE(33.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCAAGAACCTGGTCCTTA
R:
ACGGAGATCTGGACAGCTTCA
Band lengths:
178-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]