HsaINT0178180 @ hg38
Intron Retention
Gene
ENSG00000007001 | UPP2
Description
uridine phosphorylase 2 [Source:HGNC Symbol;Acc:HGNC:23061]
Coordinates
chr2:158115101-158117938:+
Coord C1 exon
chr2:158115101-158115259
Coord A exon
chr2:158115260-158117823
Coord C2 exon
chr2:158117824-158117938
Length
2564 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
3' ss Seq
CTTTCTCTTTCTCTCAATAGCAC
3' ss Score
10.96
Exon sequences
Seq C1 exon
TTTGTCTGTGTCGGTGGGAGCCCCAACAGAATGAAAGCATTTGCACTGTTTATGCACAAGGAGCTCGGGTTTGAGGAAGCTGAAGAAGACATAAAAGACATCTGTGCTGGGACAGACAGATACTGTATGTACAAAACCGGGCCTGTGCTCGCCATCAGT
Seq A exon
GTAAGTATCCATGGTTGCATTTCAGCTAGTCATTGCAGGCTAGAGAAAAAAGTGGGAACTTTTACATGTAGGAGTTCTTTTTCCCTCCAGCTTCGCATTCTTACACAATCAAACAAGGTGTCCAGGTATGAGTTCATTATTGGAAAAAGCCCCCAGGGCAGAACACAGCATGCAGCATCATTTTTGTTTATTAGTTACCACTTAGGTATTCAAATTAGGGGGAAAATACTCAAAGCACCCCTCCTTTCTCTTTACTTTGTAACTGGTTAACACCCCTCACCCCCGCCACGGCAATTTTCCTTCTTCTATCCCTTACCCAGCTTTGGGAATGTTGAGCTTTTAGTACACAGAGGCTAATTTTCAGGACTGCTAAAGTGCTGCTGTTTAACACCATAATAAGCTCGCTGAAAAGCTGCTAATGCATTTCTACTGAGCTCTTGTAAATTACTCTCCTGCATTTAGAACATGTGAACAGTTATGGAAGCACACAGTGCCCTAAGACAAAATGAAAGGGGAATGATTTGCAGTTTTAGGGAAGATGCAGACCATTTCCCCCTTGGACTCAGCTGGGCACACACTGATGAGGGCGTATGTGCATAGGCATCCCATTTGCCTTCCCATGTTTGTCTCTCTGCACAGGGCTGTATTCTGAAGCAATAACTCTGAAGCCATCACATTTCTGGGCACTGCAACCCTCAAAAGAGGCACAGGCAGGCATGCCAGGGGACAGGGGAAGAGTCTCCTGCACAGGGTGGCAATTCTAAGGAACTAAGCTGTAAGTGGCTCCTACCATAGGGAATAGGCATCATCCATTGATTGCCCTACAGTGTGGACAATCATTGATGAAAACCTGCGGTAAAGAAGGGAAAATTATGCAACACCAATAAGGCAGCTAAATTGCTCTCCTCTCTGGGCCAAGAGCGCCTGAAACCTGCTCAAATGGGAGAGTCCATTCAGTTATTCACTTGTGCATTCAATAAACCATTACAGAATATCTACATTAGAAGGAAGCTGAATATCCACTGATCTTGGTAAATTTTTTCTTACCAACATTTAGTGGACCTTTAGACTATAACTGTTTTTTGTATAGTAAATGGAGAAGGACAAAAAAGTAAGTTTCTTAAAAATGTGACACTACCATAAATAAGCAGTAAAACTTCACAGTAAGAAATGAAAACAGCAATAGACTGATCCTGTCCTGTCTGGGAAAAAGACCTGAAATATGTGTGATGCCAAGGTTACCAATTAGAAATGGGCCTTACTAGGCAGGCAGGGGATTGACAAATGTGATTCCTTCTTTGAAAATTCTTCCTCTCCAGTAGTGGTTGAATGGGGTGCGTGTGTGTGAAAGAGAGCACAAGTCCATTTGTCATTTTATCAATGCGTAACATAATAAGTGGCAATCATTAACTTACTAAATGTCTGAACTAGAAGGAATCTAATAGATCAAATAATAGTTCATCTTCTTATTTTGCAGGTAAGAAAAAATAATACTTAGAGCATTTATTCATTAGTCACAGAGCCAGTTCCAAAGTCCTAAACTTGTTAATCTTGGATATACAAATCAATACAAGTTCGATGCCTGGCTCCAGGATGCTTACTAAACATTTGAAAGTCAGGGCATATGCAATGGGAACCAGAAAGGGGTAACGCAGAGGTTCGAAGTTTCCATAGCTCAACATTCTTGATAGACGGAGGAAGCTCAGGTGAAAACATCATGGTCACGGCCAATGGTTTTCCAAAGTCTTTGTGTCCAAAAGTAGGACACATTGAAGAGCACATTTGACTCTCTGCTGTTATGTCAGGAATTAAGTTACTACCAGTTTTGAAATCAGTTCCAGTTTCTGCAAATTACAGAATGGAGGATGTTTCTGGAGAGTTATTAGGACATTGTGTAGCCACCAGGAGTTGCTAAATCCTGTAGCCTGTGTTGATCCCTTTTCTGGTGACATTGATTCCACTGTCCTGAATACTGAAAAAAACAGGGCTATGGTCATCATCTATAGTAATTTAAACTCACTTCCATGTTCAGTTTAAGTTTAAAATTGTTAAGTGGGGAATCTAACCCACGTTTCTACTCTAGTACCTTTCAGAGCACACAAAATTAACAGCAAATGAAATGGATTCACTATTTCATTTAGTATGGTTGAAAAAGACTGATGATTTGGCAACCAAAATTATATTTCCTCAAAATCAAGTCAATCGTGCAAAAAGCTCTTTTTCAAAGGCTCATCATGAAGAGCCCAGTGGGAAGATGGGAAATGGCACCGCCCTGACACACCTGTATACCACACCATCCCCACCTTCTGCTCTTGCTGATGAGGGCTGAAGTCAACAGAACTGGCAGTGAGATGCCTCCCTCTGATCTTCACAGATGGACACATCTGTCAGCATGTCATGTAGGTGCCAATTAGGGAGGACTTACATTTTCCTCAGCATTGGCAAAGTCTTAATGATTATGTAAATGTATCTGAGGCCTGTTAACTTGTAATGATGGAAGAAATTATGTCCTGTTCATGTATCACTTTGCAAGATGTATGATGACTTTCTCTTTCTCTCAATAG
Seq C2 exon
CACGGCATGGGCATCCCCTCCATTTCTATTATGCTTCATGAACTCATCAAATTACTCCACCATGCACGGTGCTGCGATGTCACCATTATTAGAATCGGTACATCAGGGGGAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007001:ENST00000005756:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0104815=PNP_UDP_1=FE(20.7=100)
A:
NA
C2:
PF0104815=PNP_UDP_1=FE(15.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains