HsaINT0178182 @ hg19
Intron Retention
Gene
ENSG00000007001 | UPP2
Description
uridine phosphorylase 2 [Source:HGNC Symbol;Acc:23061]
Coordinates
chr2:158977921-158980407:+
Coord C1 exon
chr2:158977921-158978130
Coord A exon
chr2:158978131-158980260
Coord C2 exon
chr2:158980261-158980407
Length
2130 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CGTTCTCCCCTCCCTTTCAGGCC
3' ss Score
12.58
Exon sequences
Seq C1 exon
GGATTGCACCAGGGACTGTTGTAATAACGGATATAGCTGTAGACTCCTTCTTTAAGCCCCGGTTTGAACAGGTCATTTTGGACAACATTGTCACCCGAAGTACTGAACTGGACAAAGAACTGTCTGAAGAACTGTTCAACTGTAGCAAAGAAATCCCCAACTTCCCAACCCTCGTTGGACATACAATGTGTACCTATGATTTTTATGAAG
Seq A exon
GTGAGAACAATTTATAAACTGTGAAGGAAACAGAAAAATGCCAGCAACTCTTTGTTATTCAAACCCATAATTTATATTAACAACTCTACTTAAGAAAATTAATATTTGTGGGTTAAAAAGGAAATGAAACAGCCTTTTTTACTTACTAAAGCATAGAAACACAAGGACATAATGAGCAGCAGAATGAATTTATATTGAGGGTGGATTTAATCCTCCAAGAACACATTGAACACTAAAATGCAATTAGTGATGTTCACAGAATCTTATCTCTGTTTATGCCTTTAACTTAAATTAGCAGCTCTAAGAGAAGGGAAGTATGCTGATTCTATGTTTCTGCCATTCATCTGTACCTCAAAAATGATCCTGTCCCCCGGAAACAGTGGTCCAGAAAATGGGGAGAAATGCTTGGGGAGGGGGTACAAATCCCACGGGATGGCATGATCTCAGAGCGGGGTTTTTATCTCTCAGCCATGAGTAAGGGGTCCCCAAACCAAGTTTAGAGACAAATTGAAGATGACTGCTATGTAGCAGCACTTGCTACTAGGGATGAAGGGCCAAGGGGAAGAAACCTTCAAAGACAGACCCCCGATTCTTTCTCGTCCCAGAAGAAAGAATCTACACAGTATTGGTACCATGCCTTGAAGGGCATTCTGAAAATCTGGCAGTAGTTTTATTCTTTTCAAAATCCATACTATTTCATTATAAATTACTTTTATTTTCCCTTTAGCTCAAACTTAAGATATATTGAATTTTAAAAAATTATGTTTGGAGATAGGTCATATTATCTATACATTTTACTTCCGGTTAGTAAAGGTGGTTTCACCACATATTTGTTGTAAAATAGAAGGGCTGTTGGGGTCCAATAGGGTTGGGACCCTCTGTTCAAGGCCACTGACTCATAGTCCATCTCGAGGGTCACTCACTGATATGTTAAAGCAGAATTTGCAAATGGAAGCTTGTTAAAGTCAATGTTTCCTTTGGCCTGCACAGTATTTTTAAAAATGTGAATTATTTTGCCAACATTTACAATATCTGGAGATTTTATATTAACACCCACATTTCTGGCTTTTTGAAATAACTAGCATTTAAAAATGTACACCAGTATATGCATGACAGCCTTGACAAGCCCTGACCCACATCTGGGGCTACATTTGCTGAAGGTGAGGTGAAGCTGCTCCCCTCAGACCAGACACTCGCATCGACATTACCTGCTTGGCTTCTGCGATGTCTGTGTTTGAATCAGCTTAAATAGAGGTGGTGGCACGCAGCTCTAATGAGAAGAGAAGGAACAAGGGGAAGCAGACTGCCAGGGGTGAAAGTAGCGTGAAAGAGATAGAGGAAAGGGAGAAAAAGAGAGGAAAGAGCACCAAAAAGGGGATTGTGAAAATAATGGATGGCAACAGAGTGCTATTAGCCCACTTGCTTGAATCCAGGTCTTCTCAGGAGTGAGGAGGCATTAGGAGGTCTATTTCTGGGTGTGCACAGGGTACGGAAGGAGTAATGACATCAAGGTTTCCTTTCCTTGCTTCTGTCCGCACTGGTAGATACAGCTGAAATTCAGTGATGAATGAACACTGGGAGCAGCCTGGAAAGGAAAATGTGATCACAAGGGGTGGCGTGCAGCCTGAGAAGTGTGCGGAAAGGGGGAAGGTGGACAATGTCGCAAAGGCATATGGAGAGGCGCAATGTCCAAACACTGTCCTGATCCTCAAGTAGCTTAGCATCATCGAAACCTCTTTTTTTTTCTCCCAGCACCCATCCCTGGGCCATTCCCCAGTCATTGGAGCAACCTGAGATTTTCCTCAAAGGGCAGCTCTCACAGCAACCCCCCGCTTCCTGATTTCCCTGGGCACAGTGCTGGCTGCTGCAGCCACTCAACAGTTACTGACCCCAGAACTGAGGTCCTCGGCCATGAAGGCTCCTTCCTACGTATGAGACTCCTCAGCTAGGGACAGCATCGCTCCACAGTCCTCTGGTAGGAAGAGTCACACAGCTCAGTTTATCCTACACGGGGAGCACGCTGTAGAGTTAGACAGCGGCAGCGTGCTCCAGCCAACAGCAAGCCTCCTATGAGGCCACTGTCAGTGGGGTGGGACATCAAGTCACTAAACGTTCTCCCCTCCCTTTCAG
Seq C2 exon
GCCAAGGCCGACTAGATGGAGCACTGTGCTCCTTTTCCAGAGAAAAAAAGTTAGACTACTTGAAGAGAGCATTTAAAGCTGGTGTCAGGAATATTGAAATGGAATCTACAGTGTTTGCAGCTATGTGTGGACTCTGTGGTCTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007001-UPP2:NM_173355:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0104815=PNP_UDP_1=FE(27.9=100)
A:
NA
C2:
PF0104815=PNP_UDP_1=FE(19.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)