BtaINT0157893 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012801 | UPP2
Description
uridine phosphorylase 2 [Source:HGNC Symbol;Acc:HGNC:23061]
Coordinates
chr2:38339773-38342231:-
Coord C1 exon
chr2:38342022-38342231
Coord A exon
chr2:38339920-38342021
Coord C2 exon
chr2:38339773-38339919
Length
2102 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CATTCTCCATTCTCTTTCAGGCC
3' ss Score
11.19
Exon sequences
Seq C1 exon
GGATTGCACCTGGATCTGTTGTAATAACAGATGAAGCTGTAGACTCCTTCTTTAAGCCCCGGTTTGAACAGGTAATCTTGGACAACATTGTCACCAGAAGTACTGAACTTGACAAAGAACTGGCTGAGGAAATATTCAACTGTAGCAAAGAAATTTCCAACTTCCCAACCCTCATTGGACATACGATGTGTACTTATGATTTTTATGAAG
Seq A exon
GTGAGAAGAATTTATAAACTGTGAAAGCAGTAGAAAATTACCAGCAATATTTTGTTATTCAAACCTATAATTAATATTAAAAACTTCACCATAGAGAATTAATAGTTGGGGATTTAAAAAGGCACTGAAACAGCCTTTTCAACTTACTAAAGTAAAGAAATGTAAGGACATAATAAGCAGAAGAGATATACACACAATGAATTTATTTTGAGAGTGAGTTTTAATCCTCCAAGAACAAATTGGATACTCTATGCAATTAGTGATGTTAGCAAAATCTTATCTCTGTTTATACCTTTAATTTAAACTGGAGAAAGGGGATAAACGTCTATGCTTCTGCCATTTTGAGGTACATTCACCTGTACCTTGAAAAGAAGCAGGTGCCTATTAAAGAGCGGGAACCAGGAAATCAGGAGAAATACTTGGAGGAGGAAATCTTGAAGGGATGGAATAGTCTCAGATCAGTTCTCTTCTCTCTCAGCCATGAGTAAAATGCCCTCAAATCAAGTTTAGGGACAAATTGAAGGTGACTTCTGAGTAGCAGTTCTTGCTACAAGGGGTGGGGGGCCAGGAGAAAAAGCGTTCCGGGACAGACCCTGCTCATTCCACAAGAAAAATCTAACCAGGGCTGGTACCGTTCCTTGGAGGGCATTCTAGAAATCTTGTAGTATAGGTGTGTCTGAGTATGTTCATTAAACCACATGTTACTTCACTTTAAATTATTTTTCTTTTCCTTTTGGATCAAACTTAAAGTATTACATTGAATTATAAATAATTATGTATGAAGATACATTATATTATCTATACAGGTTACTTCAGGTTAGCAAACGTGTTGTCACAACATATGTGTTATAAAATAGGAGGTGCTTTGGGTCTGATAGGGTAAAGACTCCATCTCAGGCCACTGGTCCCTTCACTGGGAGGGTCACCAATGAGTTTAAGCCAGAGCTTGCAAAGAGCACAGGTAGGAGTCAATGTTTCTTTGGGCTGCACAGTATTTTTAAAGTGTGAATTGTTTTGCCAACATTTATACGTTCTGGATTTTTCATATGAAAAATATACAGATTTAGGGCTTCTTGAAATAACATAATAACATAATATTAAAAATATAAAATAATTTATGCATGGCCGCCCTGGCAAGTCACATCTGGGGCTGTATTCATTGAAGGCGAGGTGAGGCTGCTCCCTCCCCACCAGGCACACCTCATTGACATTACCTGCTTGACTTGTGGGACGTCTGAGTTTAGATTGGTTCATTAGTGGTGTTAGCAGGCAGCTACAAGGAGTGCAGGAGAAGTAGGCAGAGTAGAAGTAGCATGAAAGATAAAGGAAAGGGGAAAGGAGAGGAAAGGGAGACAAAAAAAGAGAATTGTGCAATATGGATAACAGTGTATACTGGCCTCCCTGCTTCAACAGGACACCCTTGGAGGTAGGACCCGGTGAAGTCTGTCCCCAGCGCATGCGCAGTGGAGTCATAGCATCTGCCTTTTCTCTGGCCCCACTAATAGGTGCAGGTGGAAAAAGTGCTAAATAAACACTGAGAGCATCCTAAAAGGGAAAAACGTGATCACAAAAGGCTGGCGTGCAGCCTGAGGTGTGGGCAGGGAACAGGGTTGACAAATCAACTGTCTGTATGTACCTACCGTGGTCATGATGGTCAGATGGAACTGCAATATCCAAACCACCCTCCCAGTCCTCGAATAGCTTAGGATCATCACTGGGGCTTGGAGCATTATATTCTTCTGCAGCAACTGTTTCTGGGCCATCTGTCAGTCACAGGAGCAACTTGAGATTTTCCTCAAAGGGCAGATCTTCCAGCAACCCTCAGATCCTGCTATCCCTGGGCACAGTGCTGGCTGCTGAGGCCACTCAGTGGTTACTTGCCCCAGAGGTGGGGAGCTCAGTGCCATGGAGACCCCACTCTATGTGAGATGCTTGAGCTAGGCACAATCTTGCCTCATGTCCTCTGGTAGGATGATTCAGATGGCTAGATTTATCTTATCTGAGTTAGCCACAGAGCACTTGGTCTGACAGCAAGCCTCTTAGTGATGCCACAGCGACTGTAGAGGACATCAAGTCGCTAAACATTCTCCATTCTCTTTCAG
Seq C2 exon
GCCAGGGTCGACTCGATGGAGCACTGTGCTCTTTTTCCAGAGAAAAGGGTTTAGATTACTTGAAGAGAGCATATAATGCCGGCATCAGAAATATCGAAATGGAATCTACAGTGTTTGCAGCCATGTGTAGACTTTGTGGTCTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012801:ENSBTAT00000017006:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0104815=PNP_UDP_1=FE(27.9=100)
A:
NA
C2:
PF0104815=PNP_UDP_1=FE(19.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]