HsaINT0178920 @ hg19
Intron Retention
Gene
ENSG00000077254 | USP33
Description
ubiquitin specific peptidase 33 [Source:HGNC Symbol;Acc:20059]
Coordinates
chr1:78183552-78184326:-
Coord C1 exon
chr1:78184281-78184326
Coord A exon
chr1:78183733-78184280
Coord C2 exon
chr1:78183552-78183732
Length
548 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGG
5' ss Score
8.98
3' ss Seq
TGAATTTTATTCTTTTTTAGATT
3' ss Score
10.57
Exon sequences
Seq C1 exon
GTTGAGAAATGGAGTGAAGTTTTGTAAAGTACAAAACTTTCCTGAG
Seq A exon
GTATGGGCATTATTTTAATTCAACTTATATTGTGTGGTAGGAACATAAAGTATTAATGTAACAAAATGTAGTAATAAATTCTCTTTGCTTGGTTGAAGAATTGAATGATTGCTATGCATGCCTTTTTAAGATTATTCAGTTTTAAAATATTGAGTTAAATACCGTAAGTGCCCTTTAACAATGTGCTGTGTTGAACAAAGTTTAATCATACTTGCAGGATCTTGCCAGGTCTAAAGTGTAAAATTAGAAAAACAAATAGCAGTGAACTTAGAAAGTACCATGTTTCACCATTTCCATATTTTTAACATCTCTGGAAGCAGGTTATAATTGCAGATCAATACTTAACCTTGACACTTCAGTATATATTGAATAGACTGCTTTATCTAGCATTTAAAACGAAATAAAAATCTAAATAACTTCATAATTGTAATTTGATTGAACACCTCAGTTTCTTGCTTGTTGAATAAAAATGTTACTAAGTTTTACCTGTTATAATGCTTTTTGTTTTCTGTATTGACAAATTAGTTTTGAATTTTATTCTTTTTTAG
Seq C2 exon
ATTTTGTGCATCCACCTTAAAAGATTCAGACATGAACTAATGTTTTCCACCAAAATCAGTACCCATGTTTCATTTCCGCTAGAAGGCTTGGATCTTCAGCCATTTCTTGCTAAGGATAGTCCAGCTCAAATTGTGACATATGATCTTCTGTCAGTCATTTGCCATCATGGAACTGCAAGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000077254-USP33:NM_201624:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(11.7=100)
A:
NA
C2:
PF0044324=UCH=FE(11.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGAGAAATGGAGTGAAGTTTTGT
R:
ACTTGCAGTTCCATGATGGCA
Band lengths:
226-774
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)