RnoINT0161650 @ rn6
Intron Retention
Gene
ENSRNOG00000011294 | Usp33
Description
ubiquitin specific peptidase 33 [Source:RGD Symbol;Acc:1307848]
Coordinates
chr2:257589919-257590744:+
Coord C1 exon
chr2:257589919-257589964
Coord A exon
chr2:257589965-257590563
Coord C2 exon
chr2:257590564-257590744
Length
599 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGA
5' ss Score
8.55
3' ss Seq
TTGAATTGTACTTTTTTTAGATT
3' ss Score
7.95
Exon sequences
Seq C1 exon
GTTGAGGAATGGAGTAAAGTTTTGTAAAGTACAAAAGTTTCCTGAG
Seq A exon
GTATGACTTCATTGTCGCTCATTTATAAACTGTGGTAATGTGTTAATGTCACATGCTGTAGCAAACTCAGAATGGCTAAAACATGGACTTACCGTGTATCCCTTTAGTATTCATGGTAGGAGGTTGGGTTGAATATGGAACACCATCTGACAGTGTGCTGCTGAGCATGTCACCAGACAGGGCAGGACCCTGCGAGTCTGAGGTTGACAGCTGGACACCAGTGGCAGTGAGCTTTGGAAGAGCTGTGCTCACTCTGCCACACTGCAGATGTGTCTGGAATCAGGCTAGAACTCAGGGGGATGGATATTTAACAAATTCATAGACTCTTACTGAGAAAATGAGCCAGGCATGTGCAAATCTCTGTGAATTCCAGGCAGCCAGGTCTACACAGTGAGATCTTGTCTCTTAAAAATGGGGGAAAAAGCTCCCATTCTCCCAAATTCAAATAACTCTTTTAAAACAAACACTTAAGTTAATATAATTTTATATAATAATGCCACACTTTCTTGTTTTTACAATAAAGCTTTAGAGTACTTTGTTTTAACCACTTACAATCTTTTCTAATGATTAATTTGGATGTTGAATTGTACTTTTTTTAG
Seq C2 exon
ATTTTGTGTATCCACCTTAAAAGATTTCGACATGAACTGATGTTTTCCACCAAAATTAGCACCCATGTTTCCTTCCCCCTGGAAGGCCTGGACCTTCAGCCATTTCTTGCAAAGGATAGCCCAGCTCAGATCGTGACATATGATCTCCTGTCAGTCATCTGTCATCATGGGACTGCAAGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011294:ENSRNOT00000066125:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(2.8=100)
A:
NA
C2:
PF0044324=UCH=FE(11.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGAGGAATGGAGTAAAGTTTTGT
R:
ACTTGCAGTCCCATGATGACA
Band lengths:
226-825
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]