GgaINT0036568 @ galGal3
Intron Retention
Gene
ENSGALG00000008974 | E1BWB2_CHICK
Description
NA
Coordinates
chr8:19704508-19705465:+
Coord C1 exon
chr8:19704508-19704553
Coord A exon
chr8:19704554-19705284
Coord C2 exon
chr8:19705285-19705465
Length
731 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTG
5' ss Score
7.67
3' ss Seq
TCTACTGATCCTTCTTACAGATA
3' ss Score
10.16
Exon sequences
Seq C1 exon
GTTAAGAAATGGAGTGAAATTCTGCAAAGTGCAAAAATTTCCTGAG
Seq A exon
GTACTGTTACTACGTACACTTTAAAATGCTTTTTTGTATGATTAGGAATGTGGTAAGACTAATGAGTTGCATATGGCAAATTGTGTTTATAATGTGACATGACGAAAGTGTATCTTTGTTGGCTTTTTTTTAAGAAGTGAGAAACATTAGATTGTTCACCTTGGAAGAATGGGTACCTGGTGCATGAAAAATAAATCTGGAAGATGCGTTGGGTTTTTTTCCTCTGTTGTTGTTGTCAGCCTGCAGAACTTAATACTCTGATCTAGTCTGGCTGTGCTATTTAACTTATGCTGTTGAAGTCTTTTTCAATAAGTCATACTTGTAACTTTATGTACTAAAAGCAATCCAATCTTACACCTAAAAACGTGAGTTAATGGCTGCAACAATCAAGAAGAATTAATGTCCCTCATGCTGAGATTGAAAATATGTCCGTTAAGGAAAAGGTGTGTCTTTAATTGCTGCATCAGTGTAAGTATGAGTTCAGAACTGTCTTATTGTACTGATAGCAAAATAAGTCTTTAATAAAATTACAAATTCATTTGAAATTTCTTGAGCTTCAGTTGATTAAAATAACGTATCTGTGGAACACAGAGCTTGTGATCAGTTTTCTCAGACCACAGAGAAAAAGGATCCTTTTGGGATGATAAAAGAGAAAGATGGCATGATAAATTATAGTTATTAAAAATAAAATAGTAGCAGTGAGTGAGTGAATCTACTGATCCTTCTTACAG
Seq C2 exon
ATACTGTGCATTCATCTCAAAAGATTTAGACATGAACTTATGTTTTCCACAAAAATTGGAACCCATGTGTCCTTTCCATTGGAAGGCCTTGATCTTCAGCCTTTCCTTGCGAAGGACAGTCCAGCTCAGATAGTGACTTATGATCTCCTATCTGTCATCTGCCATCATGGAACTGCCAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008974:ENSGALT00000014598:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(2.8=100)
A:
NA
C2:
PF0044324=UCH=FE(11.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAATGGAGTGAAATTCTGCAA
R:
CTGGCAGTTCCATGATGGCAG
Band lengths:
222-953
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]