HsaINT0179939 @ hg19
Intron Retention
Gene
ENSG00000160293 | VAV2
Description
vav 2 guanine nucleotide exchange factor [Source:HGNC Symbol;Acc:12658]
Coordinates
chr9:136643884-136645061:-
Coord C1 exon
chr9:136645040-136645061
Coord A exon
chr9:136644012-136645039
Coord C2 exon
chr9:136643884-136644011
Length
1028 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
AGCTGTCCTATCCTTTGCAGGTC
3' ss Score
10.41
Exon sequences
Seq C1 exon
GACGCCTCCGGAGCGGGACCAG
Seq A exon
GTGAGTCTTCTGGACCTGGGCCCTCTGCTATCACCCATGTCAGCCATCACCTGGGAGCTGAGCCAGGGCCTAGGTGTGGTGATGGCCAGGTCTGCCCAGCCACCAGACGCTCCAGGCTCCTGGATGCTGCCATCTGGGCCCCCTCCCTCTTGCCTCTCTGGCCTCTATGGCACCTCCTTGGGAGGTGGCTCTGTTTCTGATAAGGCAGCACCAGGCTGTAGGGACAGGACCCAGCCTGCAGAGGAGCAAGGGCCTTCTAGCCAGGGAGGGCCACCGAACTGCAGCCAGAGACCTGAGATCAAAAGGCGCTGCTGTTCTCCCACCACGTTCTCCATCCCCTTCCTGCCTTGCTGCGGGTTGCTTAATGGAAACGTGCTTCTAGACACAGCGTAAAAAGCATCGTGTTCTCTGCAAACTTGAGTGCAGTCCAGGCAGTGCTCAGTACAGCCTCACCCTCATCGGCAGAGGACAAAAGATGAAAAATGCTGCTGCTGCTGCTGGGCCAGGCGGGAGCTGGGCTGGGAGAGCCATGGGCTCCTTGAGAGCTACAGGCAGGGCTGGGTCAGAGCAAGGCTTGTCTAAGAGCAGCCTCCACATTCCCTGGAGGCACAGCCAGGACCCCCATTTCAGGCCCAGAGCACCTCTGTGAGCTCTGTGGCCTTGGGCAAGCTGCTGGGCCTGCTGACCCGTCGCCCGTCTCTGACACGAGGGATCCCCCGTCTTCTGCCCCGCACAGCTGCCTGTGGGCCACAGATCTGAAGGGTGTTTGGAAGAAAACACAAAGTGCCATCTGAAAATAAGTTGCTGTTCCATGATGACCCCTGAATCTGTCTATTGCATAAATAATTATGATATTTATCAAAAAGACATGAGGCTTATGGGAAGGATTTAGGGAAGGGAGATGCAGGCGCAAGGCTGTGTGTGCTGGGGGAGGCCGAGCTTGGTGATGGGGTGGGCTGCGGGCCGGGGCCAAGTCAGTCACCGAGTGAGCTGCTGAGTCACTGAGTGAGCTGTCCTATCCTTTGCAG
Seq C2 exon
GTCCCAAGATGGTGGCCATGCAGAATTACCATGGCAACCCAGCCCCTCCCGGGAAGCCTGTGCTGACCTTCCAGACGGGCGACGTGCTTGAGCTGCTGAGGGGCGACCCTGAGTCTCCGTGGTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160293-VAV2:NM_003371:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=NA C2=0.445
Domain overlap (PFAM):
C1:
PF0765312=SH3_2=PU(4.9=37.5)
A:
NA
C2:
PF0765312=SH3_2=PU(65.6=93.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)