RnoINT0162648 @ rn6
Intron Retention
Gene
ENSRNOG00000007422 | Vav2
Description
vav guanine nucleotide exchange factor 2 [Source:RGD Symbol;Acc:1306285]
Coordinates
chr3:5825493-5826426:-
Coord C1 exon
chr3:5826405-5826426
Coord A exon
chr3:5825621-5826404
Coord C2 exon
chr3:5825493-5825620
Length
784 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
GCCATTTTCTTCTATCTTAGGTC
3' ss Score
10.21
Exon sequences
Seq C1 exon
GACGCTCCCGGAGCAGGACTAG
Seq A exon
GTGAGTGTGCTGGACCCAGCCACTTCTGCCTTCTTCAGCCACCCAACGAGCTGTGTGTGTGAGTGGTGGCGACTGAGCACAGCCGTTGTCTGCCCTAGCCTCTCTGGCTGCCTCCCAGGGTTGACTTAGGGCTGGCTTTCAGAGGACCAAGGGCTTTCTGTCCACAGCTCCTAGAGGTGCCAAGCTTAGGACCAAGACCTGTGTGATCAGGAAGCCCAGGGGTTTTTGACCTTTTTTTGTGCCCCTGGATGCTACCCAGGCTGTTTAAACATTCTGGATGAAACCTGAACTTCCTCAGAGGAAACTCAAACCCCACCCAGGTGTTACCACTATTGGGCCATATCGACCTAGGCCAGGCCTGGAAAGACAGTTTGGTGACCTCTTTGAACATTTGGGGTGAGACCGGGACCCCATCTGAGGGTAGCCTCAGATTCTTGGGTACTCAGCTATATCTATCTCCATTGCAAACCCAGGCCTGCCTCTCATCCCTAACATGGCGGGGGCCCTCCCTAGCTCCACACCTCAGATCCAGCTCAGTGGTGTCTGGGAGAGACATAAAATTCCATCTAAAAATAAGTAGCTGTTACTGGAATGTTCTGCCATCTGTTTTAATTCAGTAGATGTAGGAGCCAGGGGAGGATACAGAAAGGGCGATACAGGCCCTCGTGTCTCTCTGTGTTGGGGAACAGTTTCATGAAGGGTTCCCCAGATCAGGGAGGGTTGGTGATGGGAGGAGCCGCCAGCAAGGACGAAGTCACCCGTGAGCCATTTTCTTCTATCTTAG
Seq C2 exon
GTCCCAAGATGGTTGCCGTGCAGAATTACCATGGTAACCCAGCCCCTCCCGGGAAGCCCGTGTTGACCTTCCAGACAGGGGATGTGATAGAGCTGCTCCGGGGTGACCCCGATTCTCCTTGGTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007422:ENSRNOT00000009893:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.372
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0765312=SH3_2=PU(65.6=93.0)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]