HsaINT0181286 @ hg38
Intron Retention
Gene
ENSG00000167992 | VWCE
Description
von Willebrand factor C and EGF domains [Source:HGNC Symbol;Acc:HGNC:26487]
Coordinates
chr11:61274499-61276680:-
Coord C1 exon
chr11:61276593-61276680
Coord A exon
chr11:61274585-61276592
Coord C2 exon
chr11:61274499-61274584
Length
2008 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TCTCCCTTTCTCCTCTGCAGTGA
3' ss Score
10.65
Exon sequences
Seq C1 exon
GCTGGAAACGTGTCCTGCATCTCTCCTGAGTGTCCTTCTGGCCCCTGTCAGACCCCCCCACAGACGGATTGCTGTACTTGTGTTCCAG
Seq A exon
GTAAGTGACACTCTTGGAGCATTTTGCTTTTTTTTTTTTTTTTAGATTTTTTGTAGACCTCACTATGTTGCCCAGGCTGGTGTTGAGCCTCAGGTGGTCCTCCTGCTTCAGCCTCTCAAAGTGCTGGGATGACAGGCATGAGCCCCCAAGCCCAGTTTTGCATTTTGCTCCTTTTTTTTTTTTGAGAGGGAGACTTGCTTTCCAGGCTGGAGTGCAGTGGCATGATCTTAGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGTGATTCTCCTGCCTGAGCCTCCGGAGTAGGGAGTAGCTGGGATTACAGGCGCCTGCTGCCACACTGGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCTGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCTGCCTTGGCCTCCCAAAGTGCTGGGATGACAGGCATGAGCCCCCGAGCTCAGTTTTACATTTTGCTTCTTTGTGTGTGTAGGGGAGCATGTCTTTTGAGTATGCGATGGAGTGGGGTGAGTGGAGGAGTGAGGGAGGAGATTGCTTTCTGCTTTACAAACTCAGATCAAGTGAAGCATTTCAAAGTGCCTGTTTTTATTGTGCACTTATGTGCACAGCAGTTTGAGGCTAGACTGTGCTCACAGCCCAGCTTTCCCCTGCCTTAGGAGGCACCTTCAGCTCAGGCAGGATGGAGTTTCAGTCCACCCTTGTCATTGCTCTGTCCCAGGGCAGGGAAGGGTCTCTCCTTAGCCACTAATGAGTTGGTCCTTTGTTAAAAACAAGGTTTTCTTTCCTGGGATGGCTTCATTGCTGTCATGGATGTTCCCTGCTGACTCTGTGCCCCTTGCTGTGTGGGGCGCTTACCAGAACTCCATCTCATGGAACCCTTTATGTCACCACTGTAAGGCAGTACTATTTATTGCCCCATTTTATAGATGGGAACACTGAAGCTTGGAAAGTTCAAGTCACTGCCTAAAGACACACAACCATTAAGTAATGGAGCCGAACTTGAATTCAAGTCTACCTGATTTCAAAGCTGGTGTTCTTTTTAAGTGTTTTTTTTCTTAATGTTTAAATGTTACATTATTTTTAATTGACTTACTTTTGCATAGTCAGTGTAGTCTCTGTGAGATAGGAACCCTTATCGGTCCCATTGTACAGATGAGAAAACTGAGGCTTAGAGAGCTTTAAGTGTGTTGCCCAAAGTCATTCCCTGGTGAGTTGTATAGCTCGGATTTGAGCCCAGGGCAGTCTGACTACTGGCAGGTGGGCCTGGGCAGTTTCTAAGGCTGTTTTTTCGCTGGAGTGGATCTTCAAATCAAAGCCTCTCCCCAAATTCTCACAGCCTCCAGGGGGTGGTAGCATCATTTGTCTAAGGTAGCACCTTTGTCTTAGGTGTTGGACAGTCTCTTTTTATTTCTTTTTTTCTGTTACTTTTTAGTTATTTAGGGCTTCCCCTGCCTTTTTGGCTGAGGACCTCATCTTACATGTGACTCATTCTTTGTCAGACTTTTTTGTTGTTGTTGACATGGGGTCTTGCTCTGTCGCTCAGGCTGTAGTAGAGAGGTGCAATCACTATAACCTCAACCCCTGGTTTCAAGCCATCCTCCTGCCTCAGCCTCCTGATTAGCTAGGACAACAGGCACGCACTGCTGCACTCAGCTAATTTTTTAAAGTTTTTGTAGAGATGGGGTCTCGCTGTTTTGACCAGACTGGTCTCAAACTCCTGGCTGCAAGAGATCCTCCCACCTTGGCCTCCCAGAATGTTGGGATTACAGACATGAACTGCCACACCCACCCCTTTGTCGGCATGACTTGTTTTGTGTCTGGGGTTTGGAGGGGGAGAAGTGCTTTGGGTTCCTGGGCACGGAGCATGCTGTGGAGTGTTGTGGGTGTGTGTTAAGTGCCCCGGGGCTCCCTACCCATTTGTTCCCCCCTTTCTTTAGCTGCCTCTGCCCAAAGACCTTGAGTTGCTTCTCCCTTTCTCCTCTGCAG
Seq C2 exon
TGAGATGCTATTTCCACGGCCGGTGGTACGCAGACGGGGCTGTGTTCAGTGGGGGTGGTGACGAGTGTACCACCTGTGTTTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167992:ENST00000335613:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(49.1=90.0)
A:
NA
C2:
PF0009313=VWC=PU(44.1=89.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains