HsaINT0182093 @ hg19
Intron Retention
Gene
ENSG00000136918 | WDR38
Description
WD repeat domain 38 [Source:HGNC Symbol;Acc:23745]
Coordinates
chr9:127617913-127618237:+
Coord C1 exon
chr9:127617913-127618029
Coord A exon
chr9:127618030-127618139
Coord C2 exon
chr9:127618140-127618237
Length
110 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
CCCCGGGCTGGTGCCTGCAGGTC
3' ss Score
7.76
Exon sequences
Seq C1 exon
GCCCCGTGAAGTTCTGCCGCTTCTCCCCTGATGGCCACCTCTTCGCCAGCGCCTCCTGTGACTGCACTGTCCGCCTGTGGGATGTGGCAAGAGCGAAGTGTCTGCGGGTCCTGAAGG
Seq A exon
GTGAGTGAGCTGGGAGCCAAGCAGCCAGGCCAGCGTTCCCTTTCAGATGGTGCTGTGTCCTGTGTCACGTCACCTTTCCACCTTCCCCGACCCCGGGCTGGTGCCTGCAG
Seq C2 exon
GTCACCAACGGAGTGTGGAGACGGTCAGCTTCAGCCCTGACTCGAGACAGCTGGCATCAGGTGGCTGGGACAAGCGGGTGATGCTCTGGGATGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136918-WDR38:NM_001045476:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(69.2=67.5),PF146551=RAB3GAP2_N=PU(25.8=42.5),PF0040027=WD40=PU(20.5=20.0)
A:
NA
C2:
PF146551=RAB3GAP2_N=FE(48.5=100),PF0040027=WD40=PD(76.9=90.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGTTCTGCCGCTTCTCC
R:
CTGCACATCCCAGAGCATCAC
Band lengths:
210-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)