RnoINT0164914 @ rn6
Intron Retention
Gene
ENSRNOG00000014102 | Wdr38
Description
WD repeat domain 38 [Source:RGD Symbol;Acc:1562587]
Coordinates
chr3:23293087-23293389:+
Coord C1 exon
chr3:23293087-23293203
Coord A exon
chr3:23293204-23293291
Coord C2 exon
chr3:23293292-23293389
Length
88 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TTTTGGGCTGCTGTCTGTAGGTC
3' ss Score
8.05
Exon sequences
Seq C1 exon
GCCCAGTGAAGTCTTGCCGTTTCTCTCCCGATGGCCGCCTCGTTGCCAGCTCCTCCTGTGACCACACCATCCGCCTGTGGGATGTGGCAAAAGCCAAATGCCTGCATGTGCTGAAAG
Seq A exon
GTGAGGATTCATTTTGACCAGGAGCCACACTGGCTCCTTTGTGGACTTTGTCCCATCCGCTTTCCCACTTTTGGGCTGCTGTCTGTAG
Seq C2 exon
GTCACCAGAGGAGTGTGGAAACTGTCAGCTTCAGCCCTGACTCAAAGCAGCTGGCATCAGGTGGCTGGGACAAGAGGGTGATTCTCTGGGAAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014102:ENSRNOT00000018921:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(69.2=67.5),PF0040027=WD40=PU(20.5=20.0)
A:
NA
C2:
PF0040027=WD40=PD(76.9=90.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGTGAAGTCTTGCCGTTT
R:
GATGCCAGCTGCTTTGAGTCA
Band lengths:
174-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]