HsaINT0182094 @ hg19
Intron Retention
Gene
ENSG00000136918 | WDR38
Description
WD repeat domain 38 [Source:HGNC Symbol;Acc:23745]
Coordinates
chr9:127618140-127618599:+
Coord C1 exon
chr9:127618140-127618237
Coord A exon
chr9:127618238-127618518
Coord C2 exon
chr9:127618519-127618599
Length
281 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
CAGCTCAGGGCTCTCTCTAGTCC
3' ss Score
-0.28
Exon sequences
Seq C1 exon
GTCACCAACGGAGTGTGGAGACGGTCAGCTTCAGCCCTGACTCGAGACAGCTGGCATCAGGTGGCTGGGACAAGCGGGTGATGCTCTGGGATGTGCAG
Seq A exon
GTACGTTGAGGGGCTGGGGCCACCAGTCTGGGATTCAAGGACCAGTTCCAGAGAGGATGTCACCAGTCTTGCCCTCCCAGCTCAAACCCTCCACTGGTTCCCATGGCCCATGCCCACAGCAGGCAACCAAGGCTGCCCCCACCTGGCCACAGCCGCCTCTCCAGGCTTCCTTGCACACAGCAGCCCTCAGGCTTTTTGCACGAGGTCCCCCTTTCCTGGACTGTCAAGGCCAGGTAGCCGGCTGCCCTCTGCTGCCTTCTGCAGCTCAGGGCTCTCTCTAG
Seq C2 exon
TCCGGCCAGATGCTGCGCCTCTTAGTTGGGCACCGTGACTCCATCCAGAGCAGCGACTTCTCACCCACGGTGAACTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136918-WDR38:NM_001045476:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146551=RAB3GAP2_N=FE(48.5=100),PF0040027=WD40=PD(76.9=90.9)
A:
NA
C2:
PF146551=RAB3GAP2_N=PD(22.7=55.6),PF0040027=WD40=PU(64.1=92.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCAACGGAGTGTGGAGAC
R:
AGGCAGTTCACCGTGGGT
Band lengths:
177-458
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)