HsaEX0071099 @ hg19
Exon Skipping
Gene
ENSG00000136918 | WDR38
Description
WD repeat domain 38 [Source:HGNC Symbol;Acc:23745]
Coordinates
chr9:127618140-127618879:+
Coord C1 exon
chr9:127618140-127618237
Coord A exon
chr9:127618519-127618599
Coord C2 exon
chr9:127618748-127618879
Length
81 bp
Sequences
Splice sites
3' ss Seq
CAGCTCAGGGCTCTCTCTAGTCC
3' ss Score
-0.28
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GTCACCAACGGAGTGTGGAGACGGTCAGCTTCAGCCCTGACTCGAGACAGCTGGCATCAGGTGGCTGGGACAAGCGGGTGATGCTCTGGGATGTGCAG
Seq A exon
TCCGGCCAGATGCTGCGCCTCTTAGTTGGGCACCGTGACTCCATCCAGAGCAGCGACTTCTCACCCACGGTGAACTGCCTG
Seq C2 exon
GCCACCGGCTCCTGGGACTCCACCGTACACATCTGGGACCTGCGGATGGTGACCCCAGCAGTCTCCCACCAGGCGCTAGAGGGACACAGTGCCAACATCAGCTGCCTGTGCTATTCAGCATCCGGCCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136918-'3-4,'3-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146551=RAB3GAP2_N=FE(48.5=100),PF0040027=WD40=PD(76.9=90.9)
A:
PF146551=RAB3GAP2_N=PD(22.7=55.6),PF0040027=WD40=PU(64.1=92.6)
C2:
PF0040027=WD40=PD(30.8=27.3),PF0040027=WD40=PU(62.2=52.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAGCCCTGACTCGAGACA
R:
TGTTGGCACTGTGTCCCTCTA
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)