BtaEX0040067 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039223 | WDR38
Description
Bos taurus WD repeat domain 38 (WDR38), mRNA. [Source:RefSeq mRNA;Acc:NM_001163946]
Coordinates
chr11:95848649-95849523:+
Coord C1 exon
chr11:95848649-95848746
Coord A exon
chr11:95849085-95849165
Coord C2 exon
chr11:95849392-95849523
Length
81 bp
Sequences
Splice sites
3' ss Seq
CTTAGGGTTCTCTCCTCCAGTCA
3' ss Score
6.75
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GTCACCAGCGGAGTGTGGAGACCGTCAGCTTCAGCCATGACTCCAAGCAGCTGGCCTCGGGTGGCTGGGACAAGAGGGTGATGCTTTGGGAGGTGCAG
Seq A exon
TCAGGCCAGGTGCTGCGTCACTTTGTGGGACACCGAGATTCTGTCCAGAGCAGTGACTTCGCACCCAGCTCAGACTGCCTG
Seq C2 exon
GCCACTGGCTCCTGGGATTCTACCATCCGCATGTGGGACCTCCGGGCAGGGACCCCTGGGATCTTCCACCAGGAGCTGGAGGGTCACAGAGGGAACATCAGCTGCCTGTGCTACTCACCATCTGGCCTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039223-'4-8,'4-6,5-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(76.9=90.9)
A:
PF0040027=WD40=PU(64.1=92.6)
C2:
PF0040027=WD40=PD(30.8=27.3),PF0040027=WD40=PU(63.2=54.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGCTTCAGCCATGACTCC
R:
ATGTTCCCTCTGTGACCCTCC
Band lengths:
173-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development