DreEX6083018 @ danRer10
Exon Skipping
Gene
ENSDARG00000044801 | wdr38
Description
WD repeat domain 38 [Source:ZFIN;Acc:ZDB-GENE-050417-160]
Coordinates
chr21:5759864-5760869:+
Coord C1 exon
chr21:5759864-5759961
Coord A exon
chr21:5760593-5760673
Coord C2 exon
chr21:5760744-5760869
Length
81 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTTGTTTTCAGAGC
3' ss Score
11.34
5' ss Seq
GTGGTATAG
5' ss Score
1.27
Exon sequences
Seq C1 exon
CTCACAGGCGCAGTGTGGAGACGGTGAGCTTCAGTCCGGACGGTCAGTGGCTACTTTCGGGTGGATGGGACAACAGAGCCCTGATCTGGAGCATTCAG
Seq A exon
AGCGGTGCGCTGCTGGAGGAGCTGAAGGGTCATAATGCAGCTGTTCAGAGCAGCGTTTTCTCATCCGACTCGCAGTCTGTG
Seq C2 exon
GCAACGGGCTCCTGGGATCGAGCCGTGAGAGTCTGGAAGCTGCGGGATCGTCAAGCTGAGGCCATGGTGTTGCAGGGGCACCTGGGAAATGTGGCGTGTCTCTGTTTTTCTGTCGCTGGGATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044801-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(76.9=90.9)
A:
PF0040027=WD40=PU(64.1=92.6)
C2:
PF0040027=WD40=PD(30.8=28.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCTACTTTCGGGTGGATG
R:
CAGCATCCCAGCGACAGAAAA
Band lengths:
178-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]