HsaINT0182098 @ hg19
Intron Retention
Gene
ENSG00000136918 | WDR38
Description
WD repeat domain 38 [Source:HGNC Symbol;Acc:23745]
Coordinates
chr9:127619643-127620160:+
Coord C1 exon
chr9:127619643-127619690
Coord A exon
chr9:127619691-127619780
Coord C2 exon
chr9:127619781-127620160
Length
90 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CCACCTTCTACTCTTAGCAGGGA
3' ss Score
5.98
Exon sequences
Seq C1 exon
GTCAAAGTCTGGGACTGCAACACAGGAAAGTGCCTTGAGACCCTGAAG
Seq A exon
GTAAGGCACGGCGCTGTGGCACTGAGGAAGCTGTGGACAGCTTCTCCCAAGGCAGGACTTGCCTCGAGCCCCACCTTCTACTCTTAGCAG
Seq C2 exon
GGAGTCCTGGATGTGGCCCACACCTGTGCCTTCACCCCAGATGGGAAAATCTTAGTGTCTGGAGCTGCCGATCAGACTAGACGTCAAATATCCCGCACGTCCAAATCACCCAGGGACCCTCAAACCTAACACCAACCACCTTAGATGGTGCCGACCTCACCCGCTCCCCTCAGTGGCGCACAGGCATGCCGCTTCTCCCCACAGACGCAAAGTGACTGTGCTGGCATCCAGCAGATCCCCATGGCCAGGACTCTCCAGGCCCCACCAGAGCAGACAACTGTGGTGGGCAGGACGCTTGCTGGAACCCATCAGACACCTGGTCCCCAAAACCAGACCCACCCACCTCCACCCAATCAGTGGAAGTGCCAGGAAACAAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136918-WDR38:NM_001045476:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.333
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(10.3=25.0),PF0040027=WD40=PU(19.4=43.8)
A:
NA
C2:
PF0040027=WD40=PD(75.0=62.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAAGTGCCTTGAGACCCT
R:
GAGGTCGGCACCATCTAAGGT
Band lengths:
183-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)