MmuINT0175249 @ mm10
Intron Retention
Gene
ENSMUSG00000035295 | Wdr38
Description
WD repeat domain 38 [Source:MGI Symbol;Acc:MGI:1923896]
Coordinates
chr2:39001162-39001582:+
Coord C1 exon
chr2:39001162-39001209
Coord A exon
chr2:39001210-39001293
Coord C2 exon
chr2:39001294-39001582
Length
84 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TGCCGCTGTGTCACTGACAGGGC
3' ss Score
8.66
Exon sequences
Seq C1 exon
GTCAAAGTCTGGGACTGCCTCACAGGGAAATGCCTTGAGACCCTAAAG
Seq A exon
GTAAGACACTATGGCCAGTACAAAGACAGGGTGTCCAGGACTAACAGGAATCACTAACCCTGACTGCCGCTGTGTCACTGACAG
Seq C2 exon
GGCATGCTGGATGTGGCCCATGCCTGCATTTTCACCCCAGATGGCAAACTCTTAGTGTCAGGGGCTGCTGTGACAAGATGACAAGTCTGCTCAAAGTCGAGAACCTCTCCCATGTAGCTTACGCACAGGCCTAAGGTAACTAAGAAAGCAGCCACCAGATCTCTGCAGCAGGGACTACCCTATCCTACTCCATAACAAGGCTGTTATCTGCTGTAGGCAAGTGGTCACCTGGCCCCCCACCTCGCCCAACCAGCCCCAGGCGGCCAATGTAAAACATGAAGCAGAAAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035295:ENSMUST00000112872:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(10.5=25.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGAAATGCCTTGAGACCC
R:
AGTTACCTTAGGCCTGTGCGT
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types