RnoINT0164919 @ rn6
Intron Retention
Gene
ENSRNOG00000014102 | Wdr38
Description
WD repeat domain 38 [Source:RGD Symbol;Acc:1562587]
Coordinates
chr3:23294403-23294670:+
Coord C1 exon
chr3:23294403-23294450
Coord A exon
chr3:23294451-23294535
Coord C2 exon
chr3:23294536-23294670
Length
85 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TGACACTGTGTTACTGACAGGGC
3' ss Score
7.42
Exon sequences
Seq C1 exon
GTCAAAGTCTGGGACTGCCTCACAGGGAAATGCCTTGAGACCCTAAAG
Seq A exon
GTAAGGCACCAGGGTCAGTACCAAGACCCTTGCAGAGTGACGGGTAGGACTCACTAACCTGACTCTGACACTGTGTTACTGACAG
Seq C2 exon
GGCATGCTGGATGTGGCCCATGCCTGCATTTTCACTCCAAATGGCAAACTCTTAGTGTCAGGGATTGCTGACGCGACAAGATGACAAGTCTGCTGAAAGTCAAGAACTTCATCCATGTAACTTACCCACAGGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014102:ENSRNOT00000018921:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(10.3=25.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAAGTCTGGGACTGCCTCA
R:
GGCCTGTGGGTAAGTTACATGG
Band lengths:
181-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]