MmuEX7000897 @ mm10
Exon Skipping
Gene
ENSMUSG00000035295 | Wdr38
Description
WD repeat domain 38 [Source:MGI Symbol;Acc:MGI:1923896]
Coordinates
chr2:39001162-39001700:+
Coord C1 exon
chr2:39001162-39001209
Coord A exon
chr2:39001294-39001428
Coord C2 exon
chr2:39001620-39001700
Length
135 bp
Sequences
Splice sites
3' ss Seq
TGCCGCTGTGTCACTGACAGGGC
3' ss Score
8.66
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
GTCAAAGTCTGGGACTGCCTCACAGGGAAATGCCTTGAGACCCTAAAG
Seq A exon
GGCATGCTGGATGTGGCCCATGCCTGCATTTTCACCCCAGATGGCAAACTCTTAGTGTCAGGGGCTGCTGTGACAAGATGACAAGTCTGCTCAAAGTCGAGAACCTCTCCCATGTAGCTTACGCACAGGCCTAAG
Seq C2 exon
GCCTTGACTGCATACTTGCGCAGAGGATACAGCCGCTCCTTCCGCTGCTGCTTCTTGGTCTTCAGCTTCTCCTCGTGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035295-'8-15,'8-13,14-15=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0040027=WD40=PD(10.5=25.0)
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAAGTCTGGGACTGCCTCA
R:
GCACGAGGAGAAGCTGAAGAC
Band lengths:
125-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types