HsaINT0184446 @ hg19
Intron Retention
Gene
ENSG00000146839 | ZAN
Description
zonadhesin [Source:HGNC Symbol;Acc:12857]
Coordinates
chr7:100364148-100364880:+
Coord C1 exon
chr7:100364148-100364289
Coord A exon
chr7:100364290-100364632
Coord C2 exon
chr7:100364633-100364880
Length
343 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTCCATCTTCTTCTCCACAGGTG
3' ss Score
11.89
Exon sequences
Seq C1 exon
GTAGGGGAGCGGTGGTACAAGCCAGGCTGCAAAGAGTTGTGCGTCTGTGAAAGCAACAACAGAATTCGCTGCCAGCCCTGGAGGTGTAGGGCCCAGGAGTTCTGTGGCCAACAGGATGGTATCTATGGCTGCCATGCCCAAG
Seq A exon
GTGAGCCATCAGGGTGGAAGGTGAGCTGGGGGCTGCCCAGGCAACACCAGGCAAGGTGATGGGTCCTGCCCAAAGCAGCTTCCCCAGACAGCTGAGTCTCCACCAGGGCCTGGGAGGGGCAGCAGGGGCAGCATTTTCAGGGACCCAAAGGGTGAGGTTGGGGACGTCAGTGTTTCTCTTAGGCAGCTCCAAGCCAAGCCAACCACACTTCCTAGGGAAACACCACATCTGTGGGTGGGCCGTGGGGACCATGCCAATGTGGGCTCTCCAGGATGGCAGCTCTGAGTCAAAGCTTCCGGGGCATGGAGGAGTGAGACTGTGAACTCCATCTTCTTCTCCACAG
Seq C2 exon
GTGCCGCCACCTGCACAGCCTCGGGTGACCCCCACTACCTGACCTTCGATGGCGCCTTGCACCACTTCATGGGCACCTGCACCTATGTCCTGACCCGGCCTTGCTGGTCCAGGTCCCAAGACAGCTATTTTGTTGTGAGCGCCACCAACGAGAACCGCGGGGGGATCCTGGAGGTCTCCTACATCAAAGCCGTCCACGTGACAGTCTTTGACCTCAGCATCTCACTGCTCAGAGGCTGTAAGGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146839-ZAN:NM_003386:24
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127142=TILa=PD(78.6=91.7)
A:
NA
C2:
PF0009420=VWD=PU(50.0=94.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGTGCGTCTGTGAAAGCA
R:
ACAGCCTCTGAGCAGTGAGAT
Band lengths:
347-690
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)