BtaINT0163462 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003432 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr25:36382070-36382733:-
Coord C1 exon
chr25:36382592-36382733
Coord A exon
chr25:36382318-36382591
Coord C2 exon
chr25:36382070-36382317
Length
274 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CACCGTCTCCTGGTGCCCAGGGT
3' ss Score
5.87
Exon sequences
Seq C1 exon
ATAGGGGAGCGGTGGTTCAAGCCAGGCTGCAGACAGCTCTGCATCTGTGAGGGCACCAACAGAACTCGCTGTGTGCCGTGGCAGTGCCAGGCCCAGGAGATGTGCGGTCAGCAGGATGGCACCTATGGCTGCCACCCTCAAG
Seq A exon
GTGAGCCTGGGGGCTGCCCAAGTGACCTTGAGCGGAGGCATGGTCCTGTCCTAAAGCAGAGAGCTGGGGTATAACCAGGGGCTGGGGGGTGATTGCCCAGAGTCAAAACAACGCCTTTAAGAACCCAGACAGTGAGGCTGGAGCAGTCCCTGACCTTGACCTCTCCATGCCTCACCGACCACCCCGATGAGCCGTGGGTACCATCACCACGTGGACTGGCCAAGATGGCAGATCAAGGTGACGGCATCCCTGAACACCGTCTCCTGGTGCCCAG
Seq C2 exon
GGTCGGCCACCTGCACTGTCTGGGGGGATCCCCACTACCTGACATTCGATGGAGCCCTGCACCACTTCATGGGCACCTGCACCTACATCCTGACCCGGCCTTGCTTGTTGAAGTCCCTGGAGAATTACTTCTTTGTGAGCGCCACCAACGAGTTCCGCGGCGGAAACTTGGAGGCCTCCTACGTCAAAGCCGTCCAGGTGCAGGCCTTCGGCATCAGAGTCTGGATGCTCAAAGGCCGCAAGGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003432:ENSBTAT00000044014:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127142=TILa=PD(78.6=91.7)
A:
NA
C2:
PF0009420=VWD=PU(50.0=94.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGCTCTGCATCTGTGAGG
R:
TGGACGGCTTTGACGTAGGAG
Band lengths:
307-581
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]