HsaINT1047010 @ hg38
Intron Retention
Gene
ENSG00000146839 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr7:100766525-100767257:+
Coord C1 exon
chr7:100766525-100766666
Coord A exon
chr7:100766667-100767009
Coord C2 exon
chr7:100767010-100767257
Length
343 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTCCATCTTCTTCTCCACAGGTG
3' ss Score
11.89
Exon sequences
Seq C1 exon
GTAGGGGAGCGGTGGTACAAGCCAGGCTGCAAAGAGTTGTGCGTCTGTGAAAGCAACAACAGAATTCGCTGCCAGCCCTGGAGGTGTAGGGCCCAGGAGTTCTGTGGCCAACAGGATGGTATCTATGGCTGCCATGCCCAAG
Seq A exon
GTGAGCCATCAGGGTGGAAGGTGAGCTGGGGGCTGCCCAGGCAACACCAGGCAAGGTGATGGGTCCTGCCCAAAGCAGCTTCCCCAGACAGCTGAGTCTCCACCAGGGCCTGGGAGGGGCAGCAGGGGCAGCATTTTCAGGGACCCAAAGGGTGAGGTTGGGGACGTCAGTGTTTCTCTTAGGCAGCTCCAAGCCAAGCCAACCACACTTCCTAGGGAAACACCACATCTGTGGGTGGGCCGTGGGGACCATGCCAATGTGGGCTCTCCAGGATGGCAGCTCTGAGTCAAAGCTTCCGGGGCATGGAGGAGTGAGACTGTGAACTCCATCTTCTTCTCCACAG
Seq C2 exon
GTGCCGCCACCTGCACAGCCTCGGGTGACCCCCACTACCTGACCTTCGATGGCGCCTTGCACCACTTCATGGGCACCTGCACCTATGTCCTGACCCGGCCTTGCTGGTCCAGGTCCCAAGACAGCTATTTTGTTGTGAGCGCCACCAACGAGAACCGCGGGGGGATCCTGGAGGTCTCCTACATCAAAGCCGTCCACGTGACAGTCTTTGACCTCAGCATCTCACTGCTCAGAGGCTGTAAGGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146839:ENST00000613979:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127142=TILa=PD(78.6=91.7)
A:
NA
C2:
PF0009420=VWD=PU(50.0=94.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTGTGCGTCTGTGAAAGCA
R:
ACAGCCTCTGAGCAGTGAGAT
Band lengths:
347-690
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains