HsaINT0184449 @ hg19
Intron Retention
Gene
ENSG00000146839 | ZAN
Description
zonadhesin [Source:HGNC Symbol;Acc:12857]
Coordinates
chr7:100366233-100367597:+
Coord C1 exon
chr7:100366233-100366344
Coord A exon
chr7:100366345-100367502
Coord C2 exon
chr7:100367503-100367597
Length
1158 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
TTCTATTCTCTCTCATTTAGCTG
3' ss Score
9.41
Exon sequences
Seq C1 exon
GGAACTACAACAACAACAGCTTGGATGACAACCTGCGCCCCGACAGAAAGCTTGCAGGCGATTCCATGCAGCTGGGGGCCGCCTGGAAGTTACCTGAATCCTCTGAACCTGG
Seq A exon
GTGAGCTGGGGGTCAGGGGAGCCAGGCAGGAGGGGCTGGGCCTGGGAAGGGCCTCGGGGGGCAGCTTGGAAGTGTCCTCTGTGTGTCCCCACTCCCTCTGTGCTGTACCTCCCAACTGGCAGGAAACTGGCAATCTCTCCTGTTTAGACTCTCCAAGATTGGAGTTGGTAAGAAGCTGTTCTGACTTCCCACGCCCACGCCTGCTGATTTCTCCCATGCTTAGTGATCTCTTTGGAGGGCCCACTTGGGAAGTTCACCCTGAGGTCTAGCCTTTTTCCTTCCTGCTGCATCTCCTTGCCTTGCTACTTGAGGGCACCGTTTTGTCCTCTTCTCCTGTATCCCTCTCTCTTTCCCTGTCCACTTTTTGTTTTGTTTTGTTTTGTTGTTTTTGAGACAGAGTCACGCTCTGTCACCCAGGCTGGAGTGCAGTGGCACGATCTCAGCTCGCTGCAACTTCCGCCTCCCAGGTTCAAGTGATTATCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCACTCGCCACCACGCCCGGCTAATTTTTGTATTTTTATTTGAGACAGCGCTTCTCCGTGTTGGCCAGGCTAGTCTCAAACTCCTGACCTCAGGTGATCTGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCACACAGCCCCCTGTCCACTTTTGCTTCGGTTTGGGAGATGGTTCCTCAGGCCCTCAGGTCTTGTCTTGTCTTTTTTTTTCTTTTCTTTTCTTTCCTTTCCTTTCCTTCTCTTCCCTTTCTTCCTTCCTTTCTTCCTTCTTCCTTTCCTTTCCTTTCCTTTTTTTCTTTTCTTTTCTTGAGACAGGGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGTGCAATCATAGCTCACTGAAGCCTCCAACTGCTGGGCTCAAGCCATCCTCCCACCACAGCCTCCTGAGTAGCTGGGACTATAGGCACATGCCACCACGCCCGGCTAATTTTTAAAAATTTTGTGTAGAGATAGGATCTCACTATGTTGCCCAGGCTGGTCTTGAACTTCTGGTCTCAAGCGATCCTCCTGCCTTGGCTTCCCAAAGTGCTGGGATTATAGGCATGAGCCACTGCACCCAACCTGTAGCCCTCAGTTTCTATTCTCTCTCATTTAG
Seq C2 exon
CTGTTTCCTTGTGGGTGGCAAGCCCTCCAGCTGCCAGGAGAACAGCATGGCAGACGCCTGGAACAAGAACTGTGCGATCTTAATAAACCCTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146839-ZAN:NM_003386:27
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(10.3=42.1)
A:
NA
C2:
PF087426=C8=PU(20.0=45.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACTACAACAACAACAGCTTGG
R:
CCTGAGGGTTTATTAAGATCGCACA
Band lengths:
207-1365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)