MmuINT0177498 @ mm10
Intron Retention
Gene
ENSMUSG00000079173 | Zan
Description
zonadhesin [Source:MGI Symbol;Acc:MGI:106656]
Coordinates
chr5:137443882-137445473:-
Coord C1 exon
chr5:137445362-137445473
Coord A exon
chr5:137443977-137445361
Coord C2 exon
chr5:137443882-137443976
Length
1385 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CTCCCCTCCTCCTCATCCAGCTG
3' ss Score
9.45
Exon sequences
Seq C1 exon
GGAACTACAACAATAACAGTATGGATGACAATTTGCGTGTAGACATGAAGCCAGCAGGCAACTCACTTCTGCTGGGAGCTGCTTGGAAAATCCTTGAAGCCTCTGACCCTGG
Seq A exon
GTGAGTTGGCCATAGGGATCTTGGCCTAGGTGAGCTGAGCCTGGGTGAACTGCACTTGGGTGAGCTACGCTTGGTGAGGGCTGAGCCTTAGCGAGCTGGGCCTAGGGGAAATGGACAGAGAGAAGTGGACATAGGGGTCTGAAAATGGAGGAACTGGGAATCCCATGAGCTGGGCCTAGGGAAACTGGTCCCTGGACGAAGTCTGCAAGTGACTGTCTCTTGTGTATCTGGGCTCCCAGCTCTCAGGAACCCAGTTAGTTCTGCTCTTCATCTTCTCTTGAGTTTCCAGTGCTGGGATGGAACTCAGGACTTTGCCCATGGCAGATACACACTCAACCCCTGGCTAGGGTTTCATCTCTGACCTGAGGCTGGAAGTTGGAAAAGTTGTTCTGAGAGAGCTGGGGGTGTAGCCCAGTGGGTAAAGTGCTATACTAGCACTCATGAAGCCTTGGGTTCTATCTCCAGCACCACATAAATCAAGCAGGGTGGTGCATGCCCGCAATACCAACAGATGGGAGCTGGAGGCAGGGGGATCAGTATTTCAAAGTCATTCTGGGTCATATAGTCAGTTCAAGGCTAGTGTGGGCTACATGAAAGATTATATATATATATATTATATATGTAATATATAATATATGATATATGTAAGATATATATATATAATCTATATATATGATCTATCTATATATTTATATTTATATATATATAGAGAGAGTGGGGGCTGGGGGCTGGGGAGGTGACTCAACCTTTGAGAGTGCTAGCTGCTTTGTAGAGAACCCAGGTTTGGTTCCCAGCACCCACTGGTGCTGATGGCTCACAACCACCTGTAACTACAGTTTAAAGGGAACTGATGCCCTCTTCTGACCTCTCTAGGCACTCATGTGCCTATACTCACACACAGACATCCACATACGTAATGAAACACAATAAACTAAACATTAAAAAAAATACAAAATAAAATGTAAACAAGCTGGGCATGGTGGCTCATGTCTTTCATCCCAGCACTCAGGAGGCAGAGGCAGGTGGGTCTCTGTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGAGAGCCAGGACTATGAGGAGAGACTTTCTCAAAAAAAATAATAAAATATGTGTGTGTGTATATATACACAGTTAAGTAAAATTGTTCTGAATTCTCAGGCCTATGCCAACTGACTTCTCTTAGGCCTCCCTTTGACACAGTCACTTGAGAAGTCCTGTTGGCCCTCTAGCCTTCTTCCTTCCTGATGTGACCCCTGATGTGTCACTTGAGGGTACCCTTGTGTCACTTCCCATTTTTCTCTCTGTGGCTTAGCTTCAGTTTGTTGGACTCTTCCATCCTACATTTCTAATCTCTCCCCTCCTCCTCATCCAG
Seq C2 exon
CTGCTTTCTAGTCGGGGGCAAGCCCTCCCGCTGCGCGGACAGCGACATGGATGATGTCTGGACTAAGAAATGTGCCATCTTGATGAACCCTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079173:ENSMUST00000117564:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(9.7=39.5)
A:
NA
C2:
PF087426=C8=PU(18.9=42.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACTACAACAATAACAGTATGGAT
R:
AAGAGGGTTCATCAAGATGGCAC
Band lengths:
206-1591
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types