MmuEX6021806 @ mm10
Exon Skipping
Gene
ENSMUSG00000079173 | Zan
Description
zonadhesin [Source:MGI Symbol;Acc:MGI:106656]
Coordinates
chr5:137442027-137446864:-
Coord C1 exon
chr5:137446617-137446864
Coord A exon
chr5:137445362-137445473
Coord C2 exon
chr5:137442027-137442203
Length
112 bp
Sequences
Splice sites
3' ss Seq
GGATCCTGTACCACCCTTAGGGA
3' ss Score
5.26
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GAGCAGCCACCTGCATGGTGTCTGGTGACCCCCACTACCTGACGTTCGATGGGGCTTTGCATCATTTCATGGGCACCTGCACTTATGTACTGACCCAGCCTTGCTGGTCTAAATCTCAAGAGAACAACTTCGTCGTGAGCGCCACCAACGAGATACATGATGGCAACTTGGAAGTCTCCTACGTCAAAGCTGTCCATGTGCAGGTCTTTGACCTCAAAATCTCCATGTTCAAAGGTCAAAAGGTTGTG
Seq A exon
GGAACTACAACAATAACAGTATGGATGACAATTTGCGTGTAGACATGAAGCCAGCAGGCAACTCACTTCTGCTGGGAGCTGCTTGGAAAATCCTTGAAGCCTCTGACCCTGG
Seq C2 exon
GGCCTTTCTCCAATTGCCACGAGGCGGTGCCCCCGCAGGCCAGCTTCTCCAGTTGTGTGTATGGCCAGTGTGAGACCAACGGAGACAACCTAACCCTCTGCCACTCCCTGCAGGCCTATGCATCTCTGTGTGCCCAGGCCGGCCAGGTGACTACCTGGCGCAACAGCACCTTCTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079173_MULTIEX1-2/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PU(50.3=94.0)
A:
PF0009420=VWD=PD(9.7=39.5)
C2:
PF087426=C8=FE(79.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACAACTTCGTCGTGAGCG
R:
CACAGAGATGCATAGGCCTGC
Band lengths:
258-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types