HsaEX7004295 @ hg38
Exon Skipping
Gene
ENSG00000146839 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr7:100767831-100769974:+
Coord C1 exon
chr7:100767831-100768011
Coord A exon
chr7:100768610-100768721
Coord C2 exon
chr7:100769880-100769974
Length
112 bp
Sequences
Splice sites
3' ss Seq
TTAATGACTCCCTCCTCTAGGGA
3' ss Score
9.92
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
CTGAATGGCCATCGGGTGGCCCTACCTGTGTGGCTTGCACAAGGCCGGGTGACCATAAGGCTCAGCAGCAACCTCGTCCTCCTCTACACGAACTTTGGGCTCCAAGTTCGCTACGACGGGAGCCACTTGGTGGAAGTGACAGTCCCCTCCTCCTATGGCGGCCAGCTCTGTGGGCTGTGTG
Seq A exon
GGAACTACAACAACAACAGCTTGGATGACAACCTGCGCCCCGACAGAAAGCTTGCAGGCGATTCCATGCAGCTGGGGGCCGCCTGGAAGTTACCTGAATCCTCTGAACCTGG
Seq C2 exon
CTGTTTCCTTGTGGGTGGCAAGCCCTCCAGCTGCCAGGAGAACAGCATGGCAGACGCCTGGAACAAGAACTGTGCGATCTTAATAAACCCTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146839-'25-28,'25-27,26-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.053 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(38.5=100)
A:
PF0009420=VWD=PD(10.3=42.1)
C2:
PF087426=C8=PU(20.0=45.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGGCCCTACCTGTGT
R:
CACAGTTCTTGTTCCAGGCGT
Band lengths:
242-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains