BtaEX6110574 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003432 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr25:36380870-36381858:-
Coord C1 exon
chr25:36381678-36381858
Coord A exon
chr25:36381321-36381432
Coord C2 exon
chr25:36380870-36380964
Length
112 bp
Sequences
Splice sites
3' ss Seq
CTGACTGCTTGGTCCCCCAGGGA
3' ss Score
8.77
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
CTGGATGGTCGCCAGGTGGCTCTGCCCCTGTGGTTTGCCCACGGCCGGATGACCGTGAGGTCCAGTGGCTCCTTTATCCTCCTCTACACGGACTTCGGGCTTCAAGTTCGCTACGACGGGTACCACCTGGTGGAAGTGACTGCTCCCTCCTCCTACGCCGGCCGGCTCTGTGGGATGTGTG
Seq A exon
GGAACTACAACAACAACAGCCTGGACGACAATCTGCAGCCTGATAAGAGACCTGCTGTCAACTCCGTGCGCTTGGGGGCCTCCTGGAAGCTAAATGAGTTATCTGAATCTGG
Seq C2 exon
CTGCTTTGCTGCAGATGCCAGGCCCCCCAGGTGCCTGGAAAAGAATGCAACTGACCCCTGGAGTAAGAACTGTGATATCTTAGTGAATCCTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003432-'20-23,'20-22,21-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.079 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(38.5=100)
A:
PF0009420=VWD=PD(10.3=42.1)
C2:
PF087426=C8=PU(20.0=45.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGGTCGCCAGGTGG
R:
TTACTCCAGGGGTCAGTTGCA
Band lengths:
246-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]