MmuEX6021806 @ mm9
Exon Skipping
Gene
ENSMUSG00000079173 | Zan
Description
zonadhesin [Source:MGI Symbol;Acc:MGI:106656]
Coordinates
chr5:137885110-137887527:-
Coord C1 exon
chr5:137887347-137887527
Coord A exon
chr5:137886590-137886701
Coord C2 exon
chr5:137885110-137885204
Length
112 bp
Sequences
Splice sites
3' ss Seq
GGATCCTGTACCACCCTTAGGGA
3' ss Score
5.26
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
CTGAACAACCAAAGGGTGGTGCTACCCGTGTGGCCTTCGCAAGGACGGGTGACCATTAGGTTGAGTGGCATCTTTGTCCTGCTCTACACGAACTTTGGGCTTCAAGTTCGATACGATGGAAGGCACCTGGTGGAGGTGACAGTGCCTTCCTCATACACCGGCTCACTCTGTGGGCTGTGTG
Seq A exon
GGAACTACAACAATAACAGTATGGATGACAATTTGCGTGTAGACATGAAGCCAGCAGGCAACTCACTTCTGCTGGGAGCTGCTTGGAAAATCCTTGAAGCCTCTGACCCTGG
Seq C2 exon
CTGCTTTCTAGTCGGGGGCAAGCCCTCCCGCTGCGCGGACAGCGACATGGATGATGTCTGGACTAAGAAATGTGCCATCTTGATGAACCCTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079173-'30-32,'30-31,31-32=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(38.7=100)
A:
PF0009420=VWD=PD(9.7=39.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGCAAGGACGGGTGAC
R:
CAAGAGGGTTCATCAAGATGGCA
Band lengths:
242-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: