HsaINT0184453 @ hg19
Intron Retention
Gene
ENSG00000146839 | ZAN
Description
zonadhesin [Source:HGNC Symbol;Acc:12857]
Coordinates
chr7:100370908-100371487:+
Coord C1 exon
chr7:100370908-100371116
Coord A exon
chr7:100371117-100371343
Coord C2 exon
chr7:100371344-100371487
Length
227 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
3' ss Seq
CTGATCCCTGTGGCCCACAGGTC
3' ss Score
9.79
Exon sequences
Seq C1 exon
CTATGAGGTGCCCACCTGGCAGCAGCTACAGCCCCTGCAGCAGCCCCTGCCCAGACACCTGCAGCAGCATAAACAACCCGAGGGACTGCCCCAAAGCACTGCCCTGTGCTGAGAGCTGTGAATGTCAGAAAGGCCACATCTTGAGTGGAACCTCCTGCGTGCCCCTTGGCCAGTGTGGCTGCACTGACCCAGCGGGCTCCTACCACCCG
Seq A exon
GTGAGAGGCCAGCTAGGAGGGGCCCCGCCCTTTCCAGGCCCACATGTTTGGGGTCAGGGCAAGCTCAGGAGAGGCAGGAGGAAGGCTCAGAACCTGGGAGGGGCAGGGCTGGCCAAGGCTGGGGGGCGAGGAGGAAGGGCAGATGCTGCACCCAGCTTCAACTGGGGCGTTGGCCCATCTCCCAATTCCAACTTTCTGTTGGCTCAGCTGATCCCTGTGGCCCACAG
Seq C2 exon
GTCGGGGAGCGCTGGTACACAGAGAACACCTGCACCAGGCTCTGCACCTGCTCCGTCCACAACAACATCACCTGCTTCCAGAGCACCTGCAAACCCAACCAGATATGCTGGGCCCTGGATGGGCTGCTCCGTTTCGGGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146839-ZAN:NM_003386:30
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=PU(36.4=83.3),PF127142=TILa=PU(46.8=91.7)
A:
NA
C2:
PF127142=TILa=PD(78.2=89.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGGCAGCAGCTACAG
R:
ATCTGGTTGGGTTTGCAGGTG
Band lengths:
301-528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)