DreINT0022885 @ danRer10
Intron Retention
Gene
ENSDARG00000056781 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr7:26077788-26078301:+
Coord C1 exon
chr7:26077788-26077990
Coord A exon
chr7:26077991-26078156
Coord C2 exon
chr7:26078157-26078301
Length
166 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
ATATGTTGTTTTTTTGTCAGGTT
3' ss Score
8.06
Exon sequences
Seq C1 exon
CAATCAAGTGTCCGGTTGGCAGTCACTATGAGCACTGTGGTTCAGCATGTCCAGCCAGCTGTCAGGACCCTGGATCCGAAAGCACCTGTACTGAGCCCTGCGTTGAGGGATGTGTGTGTGACCCTGGCTTTGTCCTCAGTGGAGATGAGTGTGTGCCTTTCAGAGAGTGCGGTTGCACTGACAAAAACAACAACTACAGACCT
Seq A exon
GTGAGTTGATCTTTGAGGAACTGAATGGAACTTTCAGTTCAGTTTTGAATAATTAGAAAAACAGCATTGTTACAAGACATCTAGCACAGTTTTTACTTCTAGTTTAAGCTACACACCCCTGTGCAGTTAATTAATAATTCATATCCATATGTTGTTTTTTTGTCAG
Seq C2 exon
GTTGGAGACAGTTGGTTCACAAAAGATGATTGCACCGAGCGCTGCACATGTTCACCTTTCAATACTGTGACATGCGAGGCATGGCAATGTGGTCCTGCTCAGGAATGTAAAGTCAATGAGGGTGAACTAGGCTGTGTGAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056781:ENSDART00000159818:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=79.4),PF127142=TILa=PU(17.5=14.7)
A:
NA
C2:
PF127142=TILa=PD(78.9=91.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCGGTTGGCAGTCACTATG
R:
GAAAGGTGAACATGTGCAGCG
Band lengths:
254-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]