HsaINT1047017 @ hg38
Intron Retention
Gene
ENSG00000146839 | ZAN
Description
zonadhesin (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:12857]
Coordinates
chr7:100773285-100773865:+
Coord C1 exon
chr7:100773285-100773493
Coord A exon
chr7:100773494-100773720
Coord C2 exon
chr7:100773721-100773865
Length
227 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
3' ss Seq
CTGATCCCTGTGGCCCACAGGTC
3' ss Score
9.79
Exon sequences
Seq C1 exon
CTATGAGGTGCCCACCTGGCAGCAGCTACAGCCCCTGCAGCAGCCCCTGCCCAGACACCTGCAGCAGCATAAACAACCCGAGGGACTGCCCCAAAGCACTGCCCTGTGCTGAGAGCTGTGAATGTCAGAAAGGCCACATCTTGAGTGGAACCTCCTGCGTGCCCCTTGGCCAGTGTGGCTGCACTGACCCAGCGGGCTCCTACCACCCG
Seq A exon
GTGAGAGGCCAGCTAGGAGGGGCCCCGCCCTTTCCAGGCCCACATGTTTGGGGTCAGGGCAAGCTCAGGAGAGGCAGGAGGAAGGCTCAGAACCTGGGAGGGGCAGGGCTGGCCAAGGCTGGGGGGCGAGGAGGAAGGGCAGATGCTGCACCCAGCTTCAACTGGGGCGTTGGCCCATCTCCCAATTCCAACTTTCTGTTGGCTCAGCTGATCCCTGTGGCCCACAG
Seq C2 exon
GTCGGGGAGCGCTGGTACACAGAGAACACCTGCACCAGGCTCTGCACCTGCTCCGTCCACAACAACATCACCTGCTTCCAGAGCACCTGCAAACCCAACCAGATATGCTGGGCCCTGGATGGGCTGCTCCATTGTCGGGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146839:ENST00000613979:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=80.0),PF127142=TILa=PU(17.5=14.3)
A:
NA
C2:
PF127142=TILa=PD(78.9=91.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGGCAGCAGCTACAG
R:
ATCTGGTTGGGTTTGCAGGTG
Band lengths:
301-528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains