HsaINT0185535 @ hg19
Intron Retention
Gene
ENSG00000196670 | ZFP62
Description
zinc finger protein 62 homolog (mouse) [Source:HGNC Symbol;Acc:23241]
Coordinates
chr5:180274611-180279060:-
Coord C1 exon
chr5:180278988-180279060
Coord A exon
chr5:180278494-180278987
Coord C2 exon
chr5:180274611-180278493
Length
494 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTA
5' ss Score
7.64
3' ss Seq
TTTTCATTTTCTTGGTTTAGTGT
3' ss Score
8.74
Exon sequences
Seq C1 exon
GTTGCCTTCTTCCTCATCTCTGCAGTAACTGTCTTCATGGTTTCATAGCCTTCTCCCTGATACCCCTCCCCAG
Seq A exon
GTACTAATTTTTTCTCTTTAGTTTTGTCTGTCCTCTGCTGATTTTGTCTAACTTTTCATAATAAAAAAAAGTTTTACCTAACTTTTGTCCTACTTATGAATTTTTCTGTCTTCTTCAGAGATTTCTTCTGCCCTCTTGTTTGTTTTTCCATGACTGGGTGACATTGTTTAAAAACTGATTGGTGTTGCCCATGGTTCTGTGCATCATTTCACCCTGCCCTATGCTAAGCTGTTATGCAAGAATAGAAAAGCTCATTGTTCCATTGAAAATCCAGGGTTCTAGCATTTTAACATTAGTTCCACAGGGGCAGAAATTTTGTCATATTCATTGTTGTATCCCTAGTACTTAAAAACCGGTACATGGCACATGGTACCTGTCACACAGTATGTTGTCAGTAAATGTTTGTCAAGTGAATGTTGTTCATTGTTATTCCAGTTTGTTTTTGTTTTTTTTTAAGAGAGTGAATAGGTGTCCTTTTCATTTTCTTGGTTTAG
Seq C2 exon
TGTCACATTTGAAGACGAGCACTGAGGATGAGGAACCAACTGAAGAATATGAAAATGTTGGAAATGCAGCATCTAAGTGGCCAAAAGTGGAGGATCCTATGCCTGAATCTAAGGTTGGTGACACATGTGTTTGGGATAGCAAGGTAGAGAATCAACAGAAAAAGCCTGTGGAAAACAGGATGAAGGAGGACAAAAGCAGCATCAGGGAAGCAATCAGCAAAGCCAAGAGTACAGCAAATATAAAGACAGAACAGGAAGGTGAGGCATCTGAGAAGAGCTTGCATCTGAGCCCACAGCATATCACACACCAGACTATGCCTATAGGACAGAGAGGCAGTGAGCAAGGCAAACGTGTGGAGAACATTAATGGAACCTCCTACCCTAGTCTACAGCAGAAAACCAATGCTGTTAAGAAATTACATAAATGTGATGAATGTGGGAAATCCTTCAAATATAATTCCCGCCTTGTTCAACATAAAATTATGCACACTGGGGAAAAGCGCTATGAATGTGATGACTGTGGAGGGACTTTCCGGAGCAGCTCGAGCCTTCGGGTCCACAAACGGATCCACACTGGGGAGAAGCCGTACAAGTGTGAGGAATGTGGGAAAGCCTACATGTCCTACTCCAGCCTTATAAACCACAAAAGCACCCATTCTGGGGAGAAGAACTGTAAATGTGATGAATGTGGAAAATCCTTCAATTATAGCTCTGTTCTGGACCAGCATAAAAGGATCCACACTGGGGAGAAGCCCTATGAATGTGGTGAGTGTGGGAAGGCCTTCAGGAACAGCTCTGGGCTCAGAGTCCACAAAAGGATCCACACGGGGGAGAAGCCCTATGAATGCGACATCTGTGGGAAAACCTTCAGTAACAGCTCTGGCCTTAGGGTCCATAAAAGGATCCACACAGGTGAGAAACCTTACGAATGTGATGAGTGTGGGAAGGCCTTCATTACTTGTAGAACACTTCTCAACCATAAAAGCATCCACTTTGGAGATAAACCCTATAAATGTGATGAGTGTGAGAAATCTTTTAATTATAGCTCTCTTCTCATTCAGCATAAAGTCATCCACACTGGAGAGAAACCTTATGAATGTGATGAATGTGGGAAGGCTTTCAGGAACAGCTCAGGCCTCATAGTGCATAAAAGGATCCACACAGGAGAGAAACCTTACAAGTGTGATGTCTGTGGCAAAGCATTCAGCTATAGCTCAGGCCTCGCAGTCCATAAAAGCATTCACCCTGGGAAGAAAGCCCATGAATGTAAGGAGTGTGGGAAATCCTTTAGTTATAACTCACTACTTCTTCAACACAGAACTATTCATACCGGAGAGAGACCTTATGTATGTGATGTGTGTGGGAAAACGTTCAGAAACAATGCAGGCCTCAAAGTCCACAGGAGGCTCCATACTGGGGAAAAACCATATAAGTGTGATGTGTGTGGGAAAGCCTATATCTCACGCTCTAGCCTTAAAAATCACAAAGGAATCCACCTTGGGGAGAAGCCCTATAAATGTAGCTATTGTGAGAAATCCTTCAACTACAGCTCTGCCCTTGAACAGCATAAAAGGATTCATACCAGGGAAAAACCCTTTGGGTGTGATGAGTGTGGTAAAGCTTTCAGAAATAATTCTGGCCTTAAAGTACATAAACGAATCCACACTGGGGAACGACCTTACAAATGTGAAGAATGTGGGAAAGCATACATCTCTCTCTCGAGCCTTATAAATCATAAAAGTGTACACCCTGGGGAGAAGCCCTTTAAGTGTGACGAGTGTGAGAAGGCCTTCATCACATACCGAACCCTTACAAACCACAAAAAAGTTCATCTTGGGGAGAAGCCCTACAAATGTGATGTGTGTGAGAAATCTTTTAATTACACATCGCTCCTTTCTCAGCACAGAAGGGTCCACACTAGAGAGAAACCCTATGAATGTGACAGGTGTGAGAAGGTCTTCAGAAACAACTCAAGCCTTAAAGTTCATAAAAGAATCCATACTGGGGAGAGGCCCTATGAATGTGATGTGTGTGGAAAAGCCTACATCTCACACTCAAGCCTTATTAACCATAAGAGTACCCACCCTGGCAGGACACCCCATACATGTGATGAATGTGGAAAAGCTTTTTTCTCAAGCAGAACTCTTATAAGCCATAAAAGAGTCCATCTTGGGGAGAAACCCTTCAAGTGTGTTGAGTGTGGGAAATCTTTCAGTTACAGCTCTCTCCTTTCTCAGCACAAGAGGATCCACACAGGGGAGAAACCCTATGTGTGTGATAGGTGTGGGAAGGCCTTCAGGAACAGCTCAGGCCTCACAGTGCATAAAAGGATCCACACAGGTGAGAAACCCTATGAATGTGATGAGTGTGGGAAGGCATACATCTCACACTCAAGTCTTATCAATCATAAAAGTGTCCACCAGGGGAAGCAGCCCTATAATTGTGAGTGTGGGAAATCCTTCAATTATAGATCAGTCCTTGACCAGCACAAAAGGATCCACACTGGAAAGAAGCCATACCGATGTAATGAGTGTGGTAAGGCTTTTAATATCAGATCAAATCTCACCAAGCATAAAAGAACCCATACTGGAGAGGAATCTTTAAATGTGATATATGTGGGAAGTTATAGTGGCACATCCCAGAAGAGAACCTATGAGGGAGGGAATGCCCTGGATGGGGGCAGGATGAGGATGCCTCTGTAGCAGGCAGAGCTTACCAAGTCTCTCCGAACTCAAATGGAAGAAATACCTTATGAATGTAAGAATGTAGGGGGTCATGGCTTGTAATTTACACAGTGTAAATGAAACCATCCTAGAGGATTATGAGGAATCCTTTCTATGTGATTTTCAATCATAGCAAGCAAGAAAGGCTCCAGTGTCAAGGTAGTTCAGCTCTTACAGGATATAAAACAGTCCATACTTGAGAGAAAAACTTAGATCTGAGTGATGGAATGTGAAGCAAATCTTCAAAATCAGTAGACATTTCTGGACATAAAACACAGATGAGGAAAGGGCTTCAATTAGAAGTTACGTAATCACCATCAGAAAGTTCATGTTTGGTAAATTCTGTTACTAGAAATGTAGGAAATTCAGGTATAGCTTTGAATCCCAATTACACATTGGTCAGTGGGAAAACTAAGGGCCTCCAACAGGCAAATTCAGGGAGGATAGGTTTCAGGGAATATAAATTTATTTAATATTAGTGGTCTTTAAGTATAAACTTGATGTAATTGGTTTGGGAGGGGGCAGTGATGATGACTTCTGAAACAAAATTTGGATTTCCTTTTAGGAAAAGTAGAAAGCATAGACTTACAAGTCTAACAGGAGATAGGAGAGAGTCACTCATAAAAAATGCAAATTGATGAACGTACTATTGTGATACATTAGTTGAATGGATGAAACTTTTTTAAAGTTTCAGATGAACTCCCATAATGAATGATGAATTTGTGATGAGGGATAACCTGGAAGTGGTATTCACACATTATGCTACAATAAAAGGTTCTACCGTGGAGAGGATTTTGACACATTCAGTAACTAATGGAACACACCGTCAACATGAATTCGCACCTTACATGACAGAAGTGATTCAGGGATTCCTATGAATAGAAATGCTGAGAAGGAACGCATTTTATTGCAGAAGCTAAAAAGCTAAAGTACCAGTCATCTAGAGAGAAGGAAATTAATGTTTCTTAATAATCCTGTTAAATGTTTGATTGTTTTTGGAATGTGTTATTGTAAAGATGTCATGCAGGACATGTATATGTTGTCTGTTGTAAAATGTTAACGAATACTTTGTTCAGGGCTCACTCTCTCTTTGTCATGAAAGCCAGCTCCTTGTGGCGAGGTAAAGTGGAATTCCAATAAAGAAATTCCTTAAATCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196670-ZFP62:NM_152283:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.191
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=2.5),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.1),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTTCTTCCTCATCTCTGC
R:
TCAGATGCCTCACCTTCCTGT
Band lengths:
342-836
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)