HsaINT0185535 @ hg38
Intron Retention
Gene
ENSG00000196670 | ZFP62
Description
ZFP62 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:23241]
Coordinates
chr5:180847615-180852060:-
Coord C1 exon
chr5:180851988-180852060
Coord A exon
chr5:180851494-180851987
Coord C2 exon
chr5:180847615-180851493
Length
494 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTA
5' ss Score
7.64
3' ss Seq
TTTTCATTTTCTTGGTTTAGTGT
3' ss Score
8.74
Exon sequences
Seq C1 exon
GTTGCCTTCTTCCTCATCTCTGCAGTAACTGTCTTCATGGTTTCATAGCCTTCTCCCTGATACCCCTCCCCAG
Seq A exon
GTACTAATTTTTTCTCTTTAGTTTTGTCTGTCCTCTGCTGATTTTGTCTAACTTTTCATAATAAAAAAAAGTTTTACCTAACTTTTGTCCTACTTATGAATTTTTCTGTCTTCTTCAGAGATTTCTTCTGCCCTCTTGTTTGTTTTTCCATGACTGGGTGACATTGTTTAAAAACTGATTGGTGTTGCCCATGGTTCTGTGCATCATTTCACCCTGCCCTATGCTAAGCTGTTATGCAAGAATAGAAAAGCTCATTGTTCCATTGAAAATCCAGGGTTCTAGCATTTTAACATTAGTTCCACAGGGGCAGAAATTTTGTCATATTCATTGTTGTATCCCTAGTACTTAAAAACCGGTACATGGCACATGGTACCTGTCACACAGTATGTTGTCAGTAAATGTTTGTCAAGTGAATGTTGTTCATTGTTATTCCAGTTTGTTTTTGTTTTTTTTTAAGAGAGTGAATAGGTGTCCTTTTCATTTTCTTGGTTTAG
Seq C2 exon
TGTCACATTTGAAGACGAGCACTGAGGATGAGGAACCAACTGAAGAATATGAAAATGTTGGAAATGCAGCATCTAAGTGGCCAAAAGTGGAGGATCCTATGCCTGAATCTAAGGTTGGTGACACATGTGTTTGGGATAGCAAGGTAGAGAATCAACAGAAAAAGCCTGTGGAAAACAGGATGAAGGAGGACAAAAGCAGCATCAGGGAAGCAATCAGCAAAGCCAAGAGTACAGCAAATATAAAGACAGAACAGGAAGGTGAGGCATCTGAGAAGAGCTTGCATCTGAGCCCACAGCATATCACACACCAGACTATGCCTATAGGACAGAGAGGCAGTGAGCAAGGCAAACGTGTGGAGAACATTAATGGAACCTCCTACCCTAGTCTACAGCAGAAAACCAATGCTGTTAAGAAATTACATAAATGTGATGAATGTGGGAAATCCTTCAAATATAATTCCCGCCTTGTTCAACATAAAATTATGCACACTGGGGAAAAGCGCTATGAATGTGATGACTGTGGAGGGACTTTCCGGAGCAGCTCGAGCCTTCGGGTCCACAAACGGATCCACACTGGGGAGAAGCCGTACAAGTGTGAGGAATGTGGGAAAGCCTACATGTCCTACTCCAGCCTTATAAACCACAAAAGCACCCATTCTGGGGAGAAGAACTGTAAATGTGATGAATGTGGAAAATCCTTCAATTATAGCTCTGTTCTGGACCAGCATAAAAGGATCCACACTGGGGAGAAGCCCTATGAATGTGGTGAGTGTGGGAAGGCCTTCAGGAACAGCTCTGGGCTCAGAGTCCACAAAAGGATCCACACGGGGGAGAAGCCCTATGAATGCGACATCTGTGGGAAAACCTTCAGTAACAGCTCTGGCCTTAGGGTCCATAAAAGGATCCACACAGGTGAGAAACCTTACGAATGTGATGAGTGTGGGAAGGCCTTCATTACTTGTAGAACACTTCTCAACCATAAAAGCATCCACTTTGGAGATAAACCCTATAAATGTGATGAGTGTGAGAAATCTTTTAATTATAGCTCTCTTCTCATTCAGCATAAAGTCATCCACACTGGAGAGAAACCTTATGAATGTGATGAATGTGGGAAGGCTTTCAGGAACAGCTCAGGCCTCATAGTGCATAAAAGGATCCACACAGGAGAGAAACCTTACAAGTGTGATGTCTGTGGCAAAGCATTCAGCTATAGCTCAGGCCTCGCAGTCCATAAAAGCATTCACCCTGGGAAGAAAGCCCATGAATGTAAGGAGTGTGGGAAATCCTTTAGTTATAACTCACTACTTCTTCAACACAGAACTATTCATACCGGAGAGAGACCTTATGTATGTGATGTGTGTGGGAAAACGTTCAGAAACAATGCAGGCCTCAAAGTCCACAGGAGGCTCCATACTGGGGAAAAACCATATAAGTGTGATGTGTGTGGGAAAGCCTATATCTCACGCTCTAGCCTTAAAAATCACAAAGGAATCCACCTTGGGGAGAAGCCCTATAAATGTAGCTATTGTGAGAAATCCTTCAACTACAGCTCTGCCCTTGAACAGCATAAAAGGATTCATACCAGGGAAAAACCCTTTGGGTGTGATGAGTGTGGTAAAGCTTTCAGAAATAATTCTGGCCTTAAAGTACATAAACGAATCCACACTGGGGAACGACCTTACAAATGTGAAGAATGTGGGAAAGCATACATCTCTCTCTCGAGCCTTATAAATCATAAAAGTGTACACCCTGGGGAGAAGCCCTTTAAGTGTGACGAGTGTGAGAAGGCCTTCATCACATACCGAACCCTTACAAACCACAAAAAAGTTCATCTTGGGGAGAAGCCCTACAAATGTGATGTGTGTGAGAAATCTTTTAATTACACATCGCTCCTTTCTCAGCACAGAAGGGTCCACACTAGAGAGAAACCCTATGAATGTGACAGGTGTGAGAAGGTCTTCAGAAACAACTCAAGCCTTAAAGTTCATAAAAGAATCCATACTGGGGAGAGGCCCTATGAATGTGATGTGTGTGGAAAAGCCTACATCTCACACTCAAGCCTTATTAACCATAAGAGTACCCACCCTGGCAGGACACCCCATACATGTGATGAATGTGGAAAAGCTTTTTTCTCAAGCAGAACTCTTATAAGCCATAAAAGAGTCCATCTTGGGGAGAAACCCTTCAAGTGTGTTGAGTGTGGGAAATCTTTCAGTTACAGCTCTCTCCTTTCTCAGCACAAGAGGATCCACACAGGGGAGAAACCCTATGTGTGTGATAGGTGTGGGAAGGCCTTCAGGAACAGCTCAGGCCTCACAGTGCATAAAAGGATCCACACAGGTGAGAAACCCTATGAATGTGATGAGTGTGGGAAGGCATACATCTCACACTCAAGTCTTATCAATCATAAAAGTGTCCACCAGGGGAAGCAGCCCTATAATTGTGAGTGTGGGAAATCCTTCAATTATAGATCAGTCCTTGACCAGCACAAAAGGATCCACACTGGAAAGAAGCCATACCGATGTAATGAGTGTGGTAAGGCTTTTAATATCAGATCAAATCTCACCAAGCATAAAAGAACCCATACTGGAGAGGAATCTTTAAATGTGATATATGTGGGAAGTTATAGTGGCACATCCCAGAAGAGAACCTATGAGGGAGGGAATGCCCTGGATGGGGGCAGGATGAGGATGCCTCTGTAGCAGGCAGAGCTTACCAAGTCTCTCCGAACTCAAATGGAAGAAATACCTTATGAATGTAAGAATGTAGGGGGTCATGGCTTGTAATTTACACAGTGTAAATGAAACCATCCTAGAGGATTATGAGGAATCCTTTCTATGTGATTTTCAATCATAGCAAGCAAGAAAGGCTCCAGTGTCAAGGTAGTTCAGCTCTTACAGGATATAAAACAGTCCATACTTGAGAGAAAAACTTAGATCTGAGTGATGGAATGTGAAGCAAATCTTCAAAATCAGTAGACATTTCTGGACATAAAACACAGATGAGGAAAGGGCTTCAATTAGAAGTTACGTAATCACCATCAGAAAGTTCATGTTTGGTAAATTCTGTTACTAGAAATGTAGGAAATTCAGGTATAGCTTTGAATCCCAATTACACATTGGTCAGTGGGAAAACTAAGGGCCTCCAACAGGCAAATTCAGGGAGGATAGGTTTCAGGGAATATAAATTTATTTAATATTAGTGGTCTTTAAGTATAAACTTGATGTAATTGGTTTGGGAGGGGGCAGTGATGATGACTTCTGAAACAAAATTTGGATTTCCTTTTAGGAAAAGTAGAAAGCATAGACTTACAAGTCTAACAGGAGATAGGAGAGAGTCACTCATAAAAAATGCAAATTGATGAACGTACTATTGTGATACATTAGTTGAATGGATGAAACTTTTTTAAAGTTTCAGATGAACTCCCATAATGAATGATGAATTTGTGATGAGGGATAACCTGGAAGTGGTATTCACACATTATGCTACAATAAAAGGTTCTACCGTGGAGAGGATTTTGACACATTCAGTAACTAATGGAACACACCGTCAACATGAATTCGCACCTTACATGACAGAAGTGATTCAGGGATTCCTATGAATAGAAATGCTGAGAAGGAACGCATTTTATTGCAGAAGCTAAAAAGCTAAAGTACCAGTCATCTAGAGAGAAGGAAATTAATGTTTCTTAATAATCCTGTTAAATGTTTGATTGTTTTTGGAATGTGTTATTGTAAAGATGTCATGCAGGACATGTATATGTTGTCTGTTGTAAAATGTTAACGAATACTTTGTTCAGGGCTCACTCTCTCTTTGTCATGAAAGCCAGCTCCTTGTGGCGAGGTAAAGTGGAATTCCAATAAAGAAATTCCTTAAATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196670:ENST00000512132:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.188
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=2.8),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=2.9),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=3.0),PF134651=zf-H2C2_2=WD(100=2.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTTCTTCCTCATCTCTGC
R:
TCAGATGCCTCACCTTCCTGT
Band lengths:
342-836
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains