HsaINT0185638 @ hg19
Intron Retention
Gene
ENSG00000005889 | ZFX
Description
zinc finger protein, X-linked [Source:HGNC Symbol;Acc:12869]
Coordinates
chrX:24225443-24225972:+
Coord C1 exon
chrX:24225443-24225592
Coord A exon
chrX:24225593-24225828
Coord C2 exon
chrX:24225829-24225972
Length
236 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
TCTTCTTCCCTGATTGATAGGTG
3' ss Score
8.61
Exon sequences
Seq C1 exon
TGGATGATGCTGGCAAAATAGAACACGATGGTTCTTCTGGAATGACCATGGACACAGAGTCGGAAATTGATCCTTGTAAAGTGGATGGCACTTGCCCTGAGGTCATCAAGGTGTACATTTTTAAAGCTGACCCTGGAGAAGATGACTTAG
Seq A exon
GTAAGAAGAAGTGTTTAGACATTATACATCCTCATCCAAATGTTTCAGCCTGATTACTTTTGGGTTATTTAGATTGAGAACATTTGGAGTCTCTTCTGAAGTAACTTTTATGTAAGAATTCCGGTGTAGTAATACCAAAGTTTGTAAAAAGTAATAAGAAAATTATGTAAAAAGAAATAGGTGGAAATGCAGTTTTCAAATAAATTATTGAAGCTGTCTTCTTCCCTGATTGATAG
Seq C2 exon
GTGGAACTGTAGACATTGTGGAGAGTGAGCCTGAGAATGATCATGGAGTTGAACTGCTTGATCAGAACAGCAGTATTCGTGTTCCCAGGGAAAAGATGGTTTATATGACTGTCAATGACTCTCAGCCAGAAGATGAAGATTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005889-ZFX:NM_003410:6
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.471 A=NA C2=0.841
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=PU(19.9=97.3)
A:
NA
C2:
PF047048=Zfx_Zfy_act=PD(0.7=2.0),PF047048=Zfx_Zfy_act=PU(33.1=98.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGATGCTGGCAAAATAGA
R:
AAATCTTCATCTTCTGGCTGAGAGT
Band lengths:
292-528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)