BtaINT0164458 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007730 | ZFX
Description
Bos taurus zinc finger protein, X-linked (ZFX), mRNA. [Source:RefSeq mRNA;Acc:NM_177490]
Coordinates
chrX:126152268-126152779:-
Coord C1 exon
chrX:126152630-126152779
Coord A exon
chrX:126152412-126152629
Coord C2 exon
chrX:126152268-126152411
Length
218 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
GCTGTCATCTTCCCTGATAGGTG
3' ss Score
10.03
Exon sequences
Seq C1 exon
TGGATGATGCTGGCAAAATAGAACACGATGGTTCCTCTGGAATGACCATGGATGCAGAGTCAGAGATCGATCCTTGTAAAGTAGATGGCACTTGCCCTGAAGTTATCAAGGTGTACATTTTTAAAGCTGATCCTGGAGAGGATGACTTAG
Seq A exon
GTAAGAGAAGACCTTCAGCATAGTATCCATCCTGATCAAACACTTCACCCTAATTACTCTTTGGTGGTTTAGACAATGAATATTTGTAATCTTTTCTGAAAATAACCTTTTAAGCGAGGATTCCAATATAGCAGTAGAAAAGTATGCAAATGTAATAAGTAAAACAAGTGAAAATGAAGTTTTCACATAGATTCTTGAGCTGTCATCTTCCCTGATAG
Seq C2 exon
GTGGGACTGTAGACATTGTGGAGAGTGAGCCTGAGAATGATCATGGAGTTGAACTACTTGATCAGAATAACAGTATTCGTGTGCCAAGAGAAAAGATGGTTTATATGACTGTCAACGACTCTCAGCAAGAAGATGAAGATTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007730:ENSBTAT00000010165:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.451 A=NA C2=0.878
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(14.9=100)
A:
NA
C2:
PF047048=Zfx_Zfy_act=FE(14.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGATGCTGGCAAAATAGA
R:
AAATCTTCATCTTCTTGCTGAGAGT
Band lengths:
292-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]