RnoINT0168832 @ rn6
Intron Retention
Gene
ENSRNOG00000005624 | Zfx
Description
zinc finger protein X-linked [Source:RGD Symbol;Acc:1562664]
Coordinates
chrX:63165618-63166092:-
Coord C1 exon
chrX:63165943-63166092
Coord A exon
chrX:63165762-63165942
Coord C2 exon
chrX:63165618-63165761
Length
181 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
3' ss Seq
GCTGCTGTTTTCCTTGATAGGTG
3' ss Score
10.12
Exon sequences
Seq C1 exon
TGGATGATGCTGGTAAAATAGAACATGATGGTTCATCTGGACTGACTATGGACAACGAAACAGAAATTGATCCTTGTAAAGTGGATGGCACTTGCCCTGAAGTCATCAAGGTGTACATTTTTAAAGCTGATCCTGGAGAAGATGACTTAG
Seq A exon
GTGAGCAGTGCTGAGCAGTGCTTCAGTCTAATTATTTTTGGGTTATTTAGACTGAGAAAATACGAAGTCTTTTCTGAAGATAAATAAGTTTAGTATAGTATCAGAGAAATGTGTTTGAAAAAGGAAGACGTGGAAATGAAATTTTAAAATAAATTCTTAGAGCTGCTGTTTTCCTTGATAG
Seq C2 exon
GTGGAACCGTAGACATTGTGGAAAGCGAGCCTGAGAACGAGCATGGGGTTGAACTGCTTGATCCAAACAACAGTATGCGTGTTCCCAGAGAAAAGATGGTTTATATGGCTGTTAATGACACTCAGCAAGAAGAGGAAGAATTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005624:ENSRNOT00000065194:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.471 A=NA C2=0.808
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(14.9=100)
A:
NA
C2:
PF047048=Zfx_Zfy_act=PD(0.7=2.0),PF047048=Zfx_Zfy_act=PU(33.3=98.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGACTGACTATGGACAACGA
R:
TGCTGAGTGTCATTAACAGCCA
Band lengths:
242-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]