HsaINT0186051 @ hg19
Intron Retention
Gene
ENSG00000132950 | ZMYM5
Description
zinc finger, MYM-type 5 [Source:HGNC Symbol;Acc:13029]
Coordinates
chr13:20436539-20437776:-
Coord C1 exon
chr13:20437590-20437776
Coord A exon
chr13:20436607-20437589
Coord C2 exon
chr13:20436539-20436606
Length
983 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GTTTTCAATTCTCATTCTAGGAC
3' ss Score
10.4
Exon sequences
Seq C1 exon
CGCGAAAAGCCGGGACTGGACCTCGCGGAGTTGTGCTTGTCGCCGAAGCGGGGTGGGCTTGTTCGTTCCGCGCAGCCGCAGCCAGAACCGGGTGACGCTTATCCCCGCTGTCTTTCCAGTCCAGGGCCGCTGAGAGTGGGGGTGGCTGGGAGCAGCGCAGCCTCCGGAGGAGGAGGCGGAGGCCGAG
Seq A exon
GTGAGTGGGGAGGCGGAGATGGGTGAGAGCAGCCTCCGGAGGCTCCCACCGACCCGGGATTAATACCCCGCGGCGCGGCCGCCGTCGCCGTTGCCGCTTCGGGGCCTCGAGGGCAGCTCGGGGCTGCCCTCCTGTCACCGGCGCTTTTGCGTCCGGCCTGAGGGGCTGGGAGAGTGCGAGCGAGGCCGGGAGGGTTGGGTGAGGCGGTCGCCAGCGGCGGAGGTCGCGGGGCCGGCGGGGAGGCGGGGTGGCGGGGCGGGTTGCCGGCCGCCCGGGGAGGTCGCGGGGCATTTTTCTTTCTCTCCTGCCGCATAGTGGCGGGGGGCGGGTTGGGCGAGGGAGGGGCGCCCCGGCCGGGTCTTCGCTGTCAGGACCGCGCTGCCACCCTGCCGCCGGAGCCGAGGTCCCCAGGTTTTTCGGGCGAGGGCTTCTGCCTCTGCCCCGCTGGGTCCCCTCCTTCGCTCATCTTTTCCCAGGCGCTGCGCGGCTTTTACTCTTTGCTGCTGATCTGGGCGAGTTTAATGGCGGATCTGGGGCCCTGTCGTCGACTGCTGGGGCCCCAGGGCAACTTCTTGAGGCAACTGTGGGCCCAGAGGTGATGCGCGCCGCCCGTTACCTCTGAAATGGTGCTTGGAGTGACAGAGATGACGCTGGGTGGGCAAATTTAGGAGGGAATACAAATCCCTTGCTGGCGTCGAGACGACGTTTACCCTTCCCTCTCCCGTCCTGGGAGCAGGCCTCGGATCCCCGAGCCCACTGCATCCCCAGTACTGCAGTTGGACGAAGCACTTTTAGCTTTGTCTCGTCGTTGCGGTTCCTATAGTTCTTTTTTTTCAACTTAGTTTCTCGGTAACATTAGGGTGGGGGAGGGTAGCAGAGCCCAGGAACTCCTTGGCCTCTTACCCCTTTGCCACCTCACGGTGTTGAGTTGGTTGTGCATCCAGATTGGTTGTACCGAAATTGGTTTTCAATTCTCATTCTAG
Seq C2 exon
GACCAGGAATCACCTTCAAGCCTATGTCGTGAGGCTTTGGCAGAAATTAAGAAGGAAATATCTCCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132950-ZMYM5:NM_001039649:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCGAAAAGCCGGGACTG
R:
ATTTCCTTCTTAATTTCTGCCAAAGC
Band lengths:
246-1229
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)