HsaINT0186051 @ hg38
Intron Retention
Gene
ENSG00000132950 | ZMYM5
Description
zinc finger MYM-type containing 5 [Source:HGNC Symbol;Acc:HGNC:13029]
Coordinates
chr13:19862399-19863508:-
Coord C1 exon
chr13:19863450-19863508
Coord A exon
chr13:19862467-19863449
Coord C2 exon
chr13:19862399-19862466
Length
983 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GTTTTCAATTCTCATTCTAGGAC
3' ss Score
10.4
Exon sequences
Seq C1 exon
GCTGAGAGTGGGGGTGGCTGGGAGCAGCGCAGCCTCCGGAGGAGGAGGCGGAGGCCGAG
Seq A exon
GTGAGTGGGGAGGCGGAGATGGGTGAGAGCAGCCTCCGGAGGCTCCCACCGACCCGGGATTAATACCCCGCGGCGCGGCCGCCGTCGCCGTTGCCGCTTCGGGGCCTCGAGGGCAGCTCGGGGCTGCCCTCCTGTCACCGGCGCTTTTGCGTCCGGCCTGAGGGGCTGGGAGAGTGCGAGCGAGGCCGGGAGGGTTGGGTGAGGCGGTCGCCAGCGGCGGAGGTCGCGGGGCCGGCGGGGAGGCGGGGTGGCGGGGCGGGTTGCCGGCCGCCCGGGGAGGTCGCGGGGCATTTTTCTTTCTCTCCTGCCGCATAGTGGCGGGGGGCGGGTTGGGCGAGGGAGGGGCGCCCCGGCCGGGTCTTCGCTGTCAGGACCGCGCTGCCACCCTGCCGCCGGAGCCGAGGTCCCCAGGTTTTTCGGGCGAGGGCTTCTGCCTCTGCCCCGCTGGGTCCCCTCCTTCGCTCATCTTTTCCCAGGCGCTGCGCGGCTTTTACTCTTTGCTGCTGATCTGGGCGAGTTTAATGGCGGATCTGGGGCCCTGTCGTCGACTGCTGGGGCCCCAGGGCAACTTCTTGAGGCAACTGTGGGCCCAGAGGTGATGCGCGCCGCCCGTTACCTCTGAAATGGTGCTTGGAGTGACAGAGATGACGCTGGGTGGGCAAATTTAGGAGGGAATACAAATCCCTTGCTGGCGTCGAGACGACGTTTACCCTTCCCTCTCCCGTCCTGGGAGCAGGCCTCGGATCCCCGAGCCCACTGCATCCCCAGTACTGCAGTTGGACGAAGCACTTTTAGCTTTGTCTCGTCGTTGCGGTTCCTATAGTTCTTTTTTTTCAACTTAGTTTCTCGGTAACATTAGGGTGGGGGAGGGTAGCAGAGCCCAGGAACTCCTTGGCCTCTTACCCCTTTGCCACCTCACGGTGTTGAGTTGGTTGTGCATCCAGATTGGTTGTACCGAAATTGGTTTTCAATTCTCATTCTAG
Seq C2 exon
GACCAGGAATCACCTTCAAGCCTATGTCGTGAGGCTTTGGCAGAAATTAAGAAGGAAATATCTCCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132950:ENST00000382907:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains