HsaINT0186149 @ hg19
Intron Retention
Gene
ENSG00000090612 | ZNF10
Description
zinc finger protein 268 [Source:HGNC Symbol;Acc:13061]
Coordinates
chr12:133721020-133727740:+
Coord C1 exon
chr12:133721020-133721111
Coord A exon
chr12:133721112-133727613
Coord C2 exon
chr12:133727614-133727740
Length
6502 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGC
5' ss Score
9.14
3' ss Seq
AAATGTGTTTGATGTTGTAGACA
3' ss Score
5.97
Exon sequences
Seq C1 exon
CTTTGTCTCCTCAGCACTCTGCTGTCACTCAAGGAAGTATCATCAAGAACAAGGAGGGCATGGATGCTAAGTCACTAACTGCCTGGTCCCGG
Seq A exon
GTAAGCTGGGCTTTCTTCCCAGTTTCCAACTGGGAATTCCTTTTTGCTTTAGTTCCTTTGCCAAAGATCTTCAGAAATTATATCTTCTTCTCCAGCAGACTAGAATTAGGTTTTTGTTTTGTTTCCAGGTGAGTTAGGAAGAAGACAGATCACTGTGGGCTTTGGTCTTTCCCTCTCTTCTTTTATTATAGAAATTTTCAAATATATACAAAATAAAAATAGTAGAATAGTAGTGGAAAATATGACAGAATGGAATGAGATTAGTGTTACATTTAAAATGGACTGGAGGCTAATACAAGAAAAAGATCAACTCATGCTGACCAAAAAATTCAAAAACAGGTATTTACAAACAGTTATTCTTTTTTTGTTGTTGTTTAGACGGAGTCTTGCTCTGTCACCCAGGCTAGAGTCCAGTGGCGCGATCTCAGCTCACTGCAACCTCCACCTCCCAGGTTCAAGTGATTCTTCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGTGTGCCACTATGCCTGGCTAAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACTGTGTTAGCCAGTCTCAATATCCTGACCTCAGGTGATCCGCCTGCCTCGGCCTCCCAAAGCACTGCATTACAGGTGTGAGCTACCCCGCCCGGCCAACCAGTTATTCGTTTACAATTATATTCATATGAGGTAAGGGCATTTTGAAAATAATAAACAACACAATTCAGGATAATGCTTACTTCCAGCAAAGAACAAGAAGCACACAAGATATTTCAAAAGTATTAGGAGGAATGAAAGCATACTTAGGCTATATACCTTCTTGGCATGTCTGTACATGCTGGACTGCAGCAGATGGCACTTCTCATCTCTGTCTTCTTTAACACGGTATTGTACTGTTGTGTTAGTGTGTATAATACTATGAGACAGACGGTATTTTACAGCTAAGAGAACTGACTCATGGTGAAGTTAAATAAGCATTATCCAATCCAAAATTTAAGGTATATAGGCCAGGTGCGGTGGCTCATACCTATAATCCCAGCACTTTGGGAGGCTGAGGTGCGCAGATCACCGAGGTCAGGAGTTTGAGAACAGCACGGCCAACATGGTAAGACCCTGTCTCTACTGAAAATACAAAAATAAGCAAGCCAGGCGTGGTGGCATAGTCCTAGCTACTCCGGAGGCTGAGGCAGGAAAATTGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCCAAGATCATGCCACTGCACTCCAGCCCGCGTGTCAGAGCAAAACTCTGTCCCACCCCCCCACCCCCACAAAAAGAAAAAAACAAAAAAAACACAAAATTTAAGATGTACAGATTTGACCACAGGTTCGCCTGATTTCAAATCCGGTTCTTGGCTAACATGTCATGCACCTTTCAGTGGTGTCCCCATGATATGCTTTGTCTCTGTGTTCACAGTAAAAGTGCAATGTATTACTTATAGGAATGCTAAAAGCACCAGGCCAGAAATCAGATAGCCACTGAAGTTAAAACTGGGCAGGCTTCTTAGAAACTGAGCAGCAATGAGTGAGTCAAGGACTAGTGGAAAGTAGCAGGCACACTGAACTTCAGTAATACGAGAATGAGGTGGGAGCAGAGTGTCATCACCATTAGGCCTGAAGGGATGAGAACAGGTTCTGGAAACCAGACTTGCAGTTCACAGAGGCTGTTCCCATCTGTCAAGGTACCTCCATTACGTCACCACCACTGCACTGGGGCAACTTTCTTGCCATATCCAGCTGGTGATCTCCATTGGTGAAATAAATCAGAAAGGCAGAGGGCAAGAGAAACCTTTGGTATAATCCACACAGCTCACCCTCCCTGGGGAACAGAGTAGGGTGGAGAGGAAACCTGGAGGGAAGGAGAGAAGATATCCAGCATACAGATCTCATAGGACATTCCATTTAAAATTTTTTTTTTACATACAGTAACGTTTTCCACTTTGGATTTACAGTTCTGTGATTTTTGACAGATGCATATAGTTGTGTAGCCCCCACTTCATTCAAGATACAGAGCAGGCTGGGCACTGTGGCTCATGCCTGTAATCCCAACACTTTGGGAGGCGGAGGCGGGTGGATCACTTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGGAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGCACAGTGGCGGGCGCCTATAAACTCAGGTACCTGGGAGGCTGAGGCAGGAGAATTGCTTGAACTCAGGGAACAGAGGTTGCACTGAGCCGAGATTGTGCCACTTCACTCTACCCTAGGTGAAAGAGCGAAACTCCATCTCAAAAAAAAAACAAAACACCAAGATACAGGGCAAACCCATGATCCTAGAATTCCCTGTGTGCTGCCCCTGTGTATATAGTCCATGCTAACTCCCCCTCCAGCCCCTTGCAACCACTGATCTATTGATTTTTACCTTTTCCAGAAGGTCACATAAATGGAATCTCATAGTATGAAGCCTCTAGCTCCTTTCATATAGCATAATGTATCGGAGGTTCATCTGTTGTTGCATGAGTCAGTAGGATGTTCCTTTTTATTACTGAGTAGATTTACACTGTGTGGCTGTACCACGTTTTGTTTATGCATTTCCTGTTGAGGGACATTTGAGTTTCTTCCAGTTTTTGCCAATTATAAATAAAGCCCTTTCTCAGGTTTATACATTTGCATACAGGTTTTTGTGTGGACATAAATTTTCATACTCAGGTATTTAGCCAAGAGAATGATAGGTGTGTGCCAAGAGTACGTTTAACTTTATGAAAAATATGCAAATTTTCCAAAGTGGTTGTAGCATTTTTGCATTCTCACAGTAATGTGTGGGAGTGGCAGTTATTCCGCATCCTCACCAGCACTTGGTATCACACATTTTAAAAGTACCCTTTCTAATAAGTGTCTTAGAGGTATCTCACTGTCATTTTAACTTTCATTTCCCTAATAAATAATGATATTAAGCATCATTTGCTTATTTATTACCAACTACCTATATTCTTCTTTGGTGAAATGTTTATTTTAGTCTTTTGCTCAGTAAGAAAACTAGTCTGTTTTCTGAGTTTTTTTTTTTTTTTTTTTTGGGAGACGGAGTCTTGCTCTGTAGCCCAGGCTGGAGTGCAGTGGCACGATATCAGCTCACTGCAACGTTTGCCTTCTCCCGGATTCAAGCAATTCTCCTGCCTTAGCCTCCCGAGTAGCTGGGACTACAGGTGCATGACGCCATGCCTGGCTAATTTTTTTTTTTTTTTTTTGTATTTTAGTAGAGACGGGGTTTCACCGTGTTGCCCAGGCTGGTCTCGAACTGCTGAACTCAGGCAATCCTGAGGCATTCCCGAGGCCTGCCTTGGCCTCCCAAAGTCTGGGATTACAGGTGTGAACCACTGTGCTCAGCCTCTTACTGAGTTTTGAGGGTTCTCTGTACCTTATATGTACAAGTCCTTTGTCAGATAATGTGATTTGCAAATATTATTTCCTGGTCTCTGGCTTGTCTTTTCATTCTCTTAGCAATGTCTTTTGAAGAGGAAAAATATTTTTAGTTTTGGTGAAGCTCACTTTGTCAATTTTCTATTTGTTCTTTTTTATTTTTTTGGAGACAGAGTCTCATTCTCTCGTCTAGGCTGGAGTGCAGTGGTGTGATCTGGGCTCACTGCAACCTCTGCCTCCAGCGTCGAAGCGATTCTCATGCCTCAGCCTCCGAAGTAGCTGGGATTACTTGTGTGCATCACCATGCCCAGCTAATTTTTGTATATTTAGTAGAAACGGCATTTCACCATGTTGGCCAGGCTAGTCTCGAACTCCTGACCTCAGATGATCCTCCTGCCTTGGCCTCCCAGAGTGCTGGGATTACAGGCGTGAGCCACCATGCCTGACCTATCAATTTGTGCTTTTGGTGTTATTGTTAAGAACCCTCTGAAGAACTCAAAATGACAAATATTTTCTCCTATGTTTTCTTACAGAAGTTTTATAAATTTATATGTTACATTTTGATCTATTTAGGATTTGAAATTTTTTTGCAGATTGACACATTTATCAGTGTGTAATATCCCTCTTTATCTCTGCTAATATTCTTTGTTCTTAATTCTATGTTGTCTGATACTAATACAGCCACTCTAGCTTTTGTATGATTAGTGTTTCCATAGTATATCTGTTTCTGTCCTTTTACTTTTAACCTCTCTAGGTTTCTAGGTTGTATTCAATGTTGGTTTTTTTTTTTTTTTTTTGAGTTGGAGTTTTGCTCTCGTTGCCCAGGCTGGAGTGCAATGCCGATATCTTGGCTCACTGCAACCTCTGCCTCCTGTGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGAGATTACAGGCATGTGCCACCACACCTGGCTAATTTTGTATTTTTAGTAGAGACAGGGTTTCTCCATGTTGGTCAGGCTGGTCTGGAACCCCCGACCTCAGGTGATCCGCCCGCCTCAGCCTCCCAAAGTTCTGGGATTACAGGCATGAGCCACCGTGCCCGGCCCAGTGTTTTCTTTTAGGTAGCAGATAGTTGAGGCTTGTGGTTTGTTTGTTTGTTTGTTTTGAGGCAGGGTCTCATTGTTGCCCAGGCTGGAGTGCAGTGGTGCTATCACAGCTCACTGCAGTCTGGCTCAAACTCCTGGACTCAAGTGATTCTCCCACCTGTCTCCCCAGTAGCTGGGACTATAGGCATGAGCCACCACATCTGGCTAATTTTTAAATTTTTTGTAGACACAGGATCTCCCTATGTTGTCCAGGCTGGTCTGAAACTCCAGGGCTCAAGGGCTTGTGGTTTTTGCTATTGCTTTTTTTTTTTTTTTTTTTTTTTTAGACAGGTTCTCACTCTGTTGCACAGGCTAGAGTACAGTGGTGTGATCACAGCCCACTGTAACATCTGGCTCCTGGGTTCAAGTGATCCTCTCACCTTAGCCTCCCGAGTAGCTGGGACTACAGGCACATGCCACCACGCCTGGTTAATTTTTGTATTTTTTGTAGAGACAGGGTTTTGCCATATTGCCAGGCTGGTCTTGAACTCCTGAACTCAAGTGATCCACCTACCTCAGCCTTCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCACCCGGTTGCTTTTTTTTTTTCTTGATAAAGTTTGGCTACTTGTTTTTTAATTGTTATGTTTAGACCATTTTTGTTTAATGTTATTAATTAATACAATTGGATTTAAGTGTGTTATTTTATTATATGTTCTCTGTATATCTTTTCCCCCTTCTTAATTTACTGCCTTTATTTGGATTATTTGAATATATTTTAGTATTTCACTTAATGTCTTGGTTTTTCAGCTTTATATTTTTGTATTTTTTAATACTTGCTGTAGGGATTAGAATATACATATCTAATCTTTTACAGTCCACTTAGAGTTAATTTTTACTACTTCAAGCAAAATCTAGAAGCCTTACAACATGTGGGTCCCTTTACATTCCTCCCTTTTTGTTAAAGTTGTGTGTACGTTGAAAAACTGCACCGGAAAATGTTACAGGTCTTTCTTTCAACTGTTCTGTATATTTTTGAAAAATTTCAGAGAAGAAAACAAATCTGTTATATTTACCCAGATATCTACTGTTTTTGTTATTTATCTTCCTTTTCTGAGATTTCAGGTTTCTCTCTGGTATCATTTCCCTTCTGCCTGAAGAACTTCCTTCAGCACATCTTCTAGAGCAGAACTTCGGGCAACAAATTCTGTTAGTTTTAGTTCATTTGAGAATATCTTAATTTTGCATCATTTTTGAAAGATATTTTCACTGGACGTAGAAATTCTGGTTTGTCTGTTCTTTCAACATTTAAAAACAAACAAACATTATTCCACTGTCTTCTGACCTTTATGGTCTTTGATGAGAGACCCTCAGTCACTCAAATAGGTTTTTCTCTAGATACAATCAACACTTATTTTTGATGTGGCTGATAAGGGCCTTGCATCTGTCTCCTGTTTCTTTGTCAAATTGTTTTGCTACTGCTAAAATATAATCTCCCAACTCTTCTGTTTTTTTTTTTTTTAGTACCTACCAATAGTCATGAAAAATGTTTTGGATAATTATTTTAGGTTATAAAACATGGCTAGGGTGGTAAATCTCTTAAGCATTAAGGTGTACTTGAATTAGGTTCTTTATTTACGTAGTATAAAAGTGGGTTAACTTTTTTGGAGAATGGATGATTCCCCCTGCCATAGCTGTTTAAAATTTAATTTAAATAAAAATGCTTATGACAGTTTTCTTTAACCTAAAGCATCACATAAAACTTGTTTTCAGACAGTAGGTACCTAATAGCCATTCCTTTTAAGACTTGACTAGAATAAATACTACTCACTCCTAGAATAAATTGTGGTCCATCCACTTTACCTGCCCCAGTGCTGTCAGCTTAATTTCTCTTCCTGTTAGCGATCAGGAAAGGGGGATAGCAAAGATGCATATCTGGTGCAATGCAAATGTGTTTGATGTTGTAG
Seq C2 exon
ACACTGGTGACCTTCAAGGATGTATTTGTGGACTTCACCAGGGAGGAGTGGAAGCTGCTGGACACTGCTCAGCAGATCGTGTACAGAAATGTGATGCTGGAGAACTATAAGAACCTGGTTTCCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000090612-ZNF10:NM_015394:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3),PF124393=GDE_N=PU(29.9=88.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)