BtaINT0164884 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039242 | ZNF10
Description
zinc finger protein 10 [Source:HGNC Symbol;Acc:HGNC:12879]
Coordinates
chr17:45155079-45156870:+
Coord C1 exon
chr17:45155079-45155111
Coord A exon
chr17:45155112-45156743
Coord C2 exon
chr17:45156744-45156870
Length
1632 bp
Sequences
Splice sites
5' ss Seq
CACGTAAGT
5' ss Score
10.16
3' ss Seq
AAATTTGCTTCATGTTGTAGACA
3' ss Score
6.48
Exon sequences
Seq C1 exon
ATGGAGGCTGAGTTGCTAACTGTCCGGTCCCAC
Seq A exon
GTAAGTTGGGCTGCCTTCATTCTTTTTTGTTTTCCAACTGGGAATCCATTTTTGGTTAAGGGTTCTTAAGGGATCCATATGTCAGACACTTCCCCCTGAAGACTGGCACTATTTTGTTTGCTTTATTTATAGTTGTTTTATTTCCTTTCATATCAAAGAAACACAGCTTGAACAGAAATGTGTGGATTATCAAGGATTCTGATGAGATGCTGTTTGTCCATAGTGAGGAACTGAGCACACAGCAAGCTTTCTCCCTCAAAGATGATGACAGAACTGGGGATACTGGTGCCTTTTTGAGGGATTCTCTGGTCCCTGGTGGTCTTGGGTGTGGGGCTGGCTTGTTAGTTCCTGCCTGGGGTCTGCCTGTTTGGAGAACCTTGGGGATACGTTGTGTAATTATCCAGGAGTAACTAAAATGAAGACAGGAAGAGCCTGGGGGAGGGTGGGTCCTCTGGGGACAGAGTGACTGGGTGGGGAACCCTTCTTCAGCCTCTCTCAGCTTCTCTCCTAGATGACCCCCTCATGCTTCATGTGTATTGAAAACCCTACCAGAGAACATAGCCTTTGCTTTGGGCTGTCCTACATATTTTGAAGGACTTAAGAAAAGTGATCTACAGTATTTATCTAGATATTCCCTTTTTTTTTTTCTTTATTTGGCTACGCCACATGGCATGTGGGATCTTAGTTCCCTGGCTAGGGATGGAACCCACACCCTATGCATTGTAAGCCCAGGGTCTTAATCACTGGACCGTCAGGGAAGTCCCCAAATATTTGCTCTTTGTCTTTCTTATCTGTCATTCTTTAGATGTAAAGTTTCTCTCTTGAATTATTTTCCTTGCCTGAAGAATTCCCTTTAGCATACGTTTAGAGCTGGTCTGCTGGTAACAAATCCTGTTTAACTTTATTTGAGAATGTATTTTTCATCATTCCTGAAAGATATTTTCACCTAGTATTGAAATTCTTGCATGACAGTTCATTTCTTTCAACATTAAAAAAGCCCACTATTCTACTATCTTTTTATCTTCACAGATCTTTGATGAAAAACACCCAATCATTCAAATGGGTTTTTTTCCTTCTATGTGTCATCTACAGTTCTTTTTGATGTGGCTAATAAAAACCTTGCTTCTGTATCTGTTATTTTGTTACTATAAAATATAAGCTCTTCTCCATTTTTTAGTGCCTACCAATGTTTAAGAAAATTGTTTTAGAAATTATTTGAGGTCATGAAACATGGCTACATTCATCTCTTAAGCGTTAATTTGTACTTGAATTGAAGACTGTTTTTCCCTTCTTTTCCTGCCTTGTATTAGGTTCTAATTATTTCACATACATGTAGATTAACTGATTCTCCTTGCTTTAGCTGTTTACGACTTACTTGATTTAAATGAGAGTGTTTCTGACAGTTTCTTAACCTAAAGTGTAACATGAAGCTGGTTTCTAGACAGTGCATACTTAATACCATTCCTTTTAGGGCTTGTCCAGAAGTCGACATAAATACTACTCATTCCTAGAATACATTATGTTCTATTCTCTTTCCCTACCCAAGGGCTATCTGCCTAGTCTTCTTGTTAATATTTGGGAAAGTGGGGGAGCAGAGATACACATCAGGCTCAAATTTGCTTCATGTTGTAG
Seq C2 exon
ACACTGGTGACCTTCAAGGATATACTTGTGAACTTCACCAGGGAAGAGTGGAAACTGCTGGACACTGCTCAGCAGATCATGTACAAAGATGTGATGCTGGAAAACTACAGAAACCTGGTGTCTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039242:ENSBTAT00000056931:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development