MmuINT0180037 @ mm9
Intron Retention
Gene
ENSMUSG00000031907 | Zfp90
Description
zinc finger protein 90 [Source:MGI Symbol;Acc:MGI:104786]
Coordinates
chr8:108939239-108943097:+
Coord C1 exon
chr8:108939239-108939670
Coord A exon
chr8:108939671-108942970
Coord C2 exon
chr8:108942971-108943097
Length
3300 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GCAGGGCTGTGATCCCACAGGAG
3' ss Score
5.43
Exon sequences
Seq C1 exon
GTGGCTCTGCGCCCGCCGCTGTGGCCATTGTCCGACCCTGTTGTTGCAGAGCAGTACTGCCGGGAACAAGAAACTGCAGCGGGCGCTAGAGGGGCGGACCTGAGGTCGCGGATTCCGAAGCCCCGGAGGCAGATTCCGAGTGCAGTGGGTAGGAGGCTGTCCTCCGGGCCTCGCCGACCATCCTGCGGACGGACTGGGCGTGGCCGGAGGAACTGTCCCGAAGCTGTGGGGCCTTTCATTTGGCCTTGGGAAGAGCAGCAGGAGAAGGCGGGGCTCCTCCCCACGTTTCGGCCGAAGTGGCTGCAGAGCTGAAGGGGTGGGGCCTCGGGGTAGCCCGGTGAGTGGATCCTGTCCTCTCTCCTCAGCCCTGGACCATAGCCAGCACACACTGAGGCAGGAATGGCCCCGAGACCTCCGACGGCCAAGCCCCAG
Seq A exon
GTGAGCCGAGCCTTCCCCCACCGCCCGGAGCATCCCACCCTGAGAGGCCCCCGGAGTCTGTATGGAACAGTTATTGGTATAGGTATAGAGAGTCTTAGTTTGGATCGCTTTGAGTCTCCTCCTCTGGAGAAAACCCCTCCCAAAGTGCCCAGCCCTGGGCAGAGCAGGATTTCTGAAAGGATGGAGTTAAAGAGGAGACTAGGGAAGTGCGATCTTGTGAGAGGAAGTGTTCTGGGGGTGTCAGCACTGAGACTTTATTGCAGTGTGCACTTCTTAGAACTCTTCAGTGAGGAATGGAGGATAGAGGGACAAAATAGAAAAGCCCCCTGCTTCCCATCCAAAGGCCATAAAGAGATAGTAGGGGGGCAGAAGAGACCTATTAGAATAAGAGGCCGGTGAAGGTTGGGCGCTGAGTCGGAGACCACCATTACAGCCAAACCTGGTCAGACAAGCTCCAGCTTTTCTTGCCCCCCCCCCCGCCCCACTCGTTTTATTTTCCTTTCTTTCTTTCCCCATTAACAAATGTATAATAGTGCGCACCCTCCATAGCCCCGGCTTCAGGTTAATTAGTAAGAGACAGATTTATCAACCCACTTTTTAGTTGTAGCAAAAGGGGCATTTTCTGGACATAAGCTCTGAGGCTGTCCGTTTTACTTTGATGAGAACATAATCTGAACTCTCTTTGGAGTTGAAGGTAAGAACTAGGACTATAGCTCAGTGGTAGATCACTTGCCTAGTATGTGTGAGGTCCTAGGTTCAATTCCCAGCACCTCCTGGAAAATGATAAGGATGGGCTGGAGAGATGGCGCTCCAGTTAAGAGCACACACTGTAAGCTTTTACACGCTGCTCTTGCAGAATTAGTTTCGTTCCTAGTACTCACGGCAGGAAGTACACATCCACCTTGTAATACAGGTTAAAGGGGACCTGATGGCTCTGGCTTCTTGGATACCTGCTCTCACAGGAACAAAATTGTTAGAAACGGGGGAAAAAAATCTCAGCTCAAGGCATTGAGGAAGAAAGGATCGCACAGAGTTGAAAGAAGCCTAGCAGGGCTCTGAACTCTTGTAAAAATGGTCCAACTGAACCAAAACTGAGCTAAAAACCACAGTTTGCCAGGGTGACTTCCGTCTTTTCTCCCTCACAGAGGTGGTGACTGAAACTCATCCCGTTAATTGAAGCTTGATCCTATAATCTGACACGATTGGCTAATTGTTGCAAAGGGGAAGGCTTGGGGAATATAATATGGGCCTTTATAAGGCTATTTTCGTGAGGGGAAAAAGGGTTTGCACAATACCCACAGAGAGACCCATAATATAACAAAATACTTTTAACAGTAAGCTACAAGTTGTAGTTGCTACAGGTATCATATAATCAAGTTCAATCTAGATAAAAATACTAACAGTATCTTTTAAGGTCAGTTTATAGAGTCCAAAAATGTAGCACAGTCAGTTGCTATGTATATCATATAATCAAGTTCAATCTAGTTAAAAATACTAACAGTGTCTTTTAAGGTCAGTTTATAGGGTCCAAAAATGTAGGGCAGTCAGTAGAGTCGCTGCCTAGAGTGCAGGGAACCCTGGGTTTACATCCCTTCATGAACTGCACACAGCCTGGGGAGAACTAGAGAAGTCACCCTTGGGAAAGAACATTGATCGAGGTCTAGAACAGTGGCTAGGAGTATTTTCTGTAGAGCTGAGGGAAGGCCATGCACTGTGGTGAGGATGTGCAAAGCAAAAGGATGCAAAAGAGAGACAAGTTAATAAGGCAAGGAGTCCATGTGACAGGAACCGAACTGCCGCCTTCTGCCTTTTGTGGATCAGCAAGTTGCTGCCTGGTTGTGTTGTTTGCAAAGACCCACACAGGTGATGATGATGGTGATGGTGGTGATGATGATGATGATGATGTTCTAGATTATTTTAGACCTCTACCTCCTGCTATTCTTTCCAGGCAACTGAATCACCTTCTCTTTAAACTTTGCTTCCTATCCTATGCCCTGTGCTTCTGTCTAATGGGAAAAAAAAAATCAAATTGTAGAGCTAGAGATGGCCTCAGCTGATACAATGCTTACCTAGCATGAGCCAAGCCCTGGCTTCCCTCCCAGTGCCACAGACACCAGATGTTGTGGTGCGCGCCTGTAATCCTGCTGTTGGGAAGTAGAACCAGAAAGATCGGAGGTTCAACCTCGACCACATAGTGTGCTGGAGATCAGCCTGGGATACACGAGAACCTGTCTTAATAATTATAAATGGGGCTAGAGAGATGGCTCAGCAGTTAAGAGCACTGACTGCTCTTCTGAAGGACCTAAGTTCAAATCCCAGCTACCATGTGGTGGCTCACAACCATCCGTAATAAAATCTGATGCCCTCTTCTGGGGTGTCTGAAGACACTACAGTGTATTTACATATAAGAAAGAAAGGAAGGAAGGAAGGAAAGGGAAAGGGAAAAGAGGGAAAAAGGGAAAAGGGAAAGGAAAAGGAAAGAGAAAAGGTTGAGAGTACTGACTGCTCTTGCAGAAGACCCAGGTCCATTTTCCAAAACCCACAGAGTGGCTCACAACTGCCTGTAACACAGCTCCAGGGGATCTGATGTGTTCTCCTGACCCTCATGGGTTCCCGCATGAACACAACGCACACACATACCCTCAGATACACACACATAAATGAATGAGCAGATATTTTTAAACATTAGTGAATACATAAAAAGCAATTTGTAGATCAATGTGTGTAATGGTTCATAAAGCATGCGTGTAGAACGTGTGTAAAACATGGACAGGGAGCTCCTAGGTATGTACACCAACGGTTGGGAATGATTATTGGGAGAATATATGGGGATAGGAAGGCTTGGTGATGGTGGTGTTCGCCTTTAGTCTCAGCACTCGGGAGGCAGAGGTAGCTGGAGTTCTGTGAGTTTGGAGCCAGCCTGGTTCAAGAGCGAGTTCTAGGATGGCTAAGGCTGTAACGGTGAAAGAGAACGGGAGCTGTGATCTGTGCAGGACAGTGTAGGCCTGTGGTCCCAGCCCACAAAGGCAAAGCACTAGGGATCCACAGTCACCTTCAACCACCTATTGAATCCGAGGCCAGCCCAGGCTACATTCGACAGAATCGTACACGCAGGGCTGTGGGATAGACTTCCCCTTTGACTTTTCCGTCAGGCAAACTCGGTGCTTGAAATTAGCATACAAAACCAAACCTTGCCCCTTGGAGCGGCTAACACATGGTCCCCAAGTCTGTTGTTCCCAGCACTTCAAGAGGAGCGTTTGTGCTGTTGATTCCGACTTGAGCAGGGCTGTGATCCCACAG
Seq C2 exon
GAGTCGGTGACATTCAAAGATGTGGCTGTGAACTTCACCCAGGAAGAATGGCACCACGTGGGCCCTGCCCAGAGGAGCTTATACAGGGATGTCATGCTGGAGAACTACAACCACCTGGTGTCGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031907-Zfp90:NM_011764:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.116
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: